Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02739 ATGAGCTATCACATGCATAATAATGAAGATACACGCAGAGGTTTGAAAAGAAAGCCCCCACATATGGATCGAGGGCAAGAACGGAGACCTTACAATATGAATTCTAGACCTTATGATAGGAACGCAGTTCCTGATGGTTGGTTTGACTGCCCACCACATGGGCAAGAACTAGGATGCATAATCCCTTCAAAGGTTCCACTTGGTGAATCCTTCAATGATTACATTCCAGGTCAAAAATATACTCCCAAGCAAGCAATTCAACAACAAAGAGTCTTAGGTAGAGAACTTGGTTTAGTGATTGATCTGACAAATACTACTCGTTACTATCCTGTATCAGATTGGACAAAAGAAGGGATTGGTCATGTCAAGATAAGATGCACAGGAAAAGATGCTGTACCTGATGATGAGTCTGTAAAAAAATTTTGTGATGAGGTTCTGGATTTTTGCTCCAAAAGAACAAATGCAAAGAAATATATACTCGTGCATTGCACACATGGGCATAATCGTACAGGTTATATGATTGTTCACTTTCTTGTGCGTACAGAATCTATTTCAGTTACTGAGGCGATAAATAAATTTGCTTGGGCACGTCACCCAGGAATTTACAAGCAGGACTACATTGACGCCTTGTACATGTATTATCATGAAAAGAAGCCTGAAGATCTTGTTTGTCCTCAAACTCCTGAATGGAAGAGAATTTCTGATCCTGATTTTCGTGGCACAGCTGTCCCAGCTGTGGACAATTATGGACACATTCCGGAACAGGAGAATATTGTGAGGAATGAAGTATTGACAAATGATGATGTTTTGGGAGATCCAATTCCTACAAACCAGCTGCGTGCAATGCAAGAAGTTTGTTATCAACTGCTCAAGTTGGGCACAGGGGGAAGAGGACGTTCGCAGTTTCCTGGATCGCACCCTGTTTCTCTGAACAGGGACAATCTGCAACTCTTAAGACAACGGTATTACTATGCCACGTGGAAAGCTGATGGGACAAGATATATGATGCTGATTACTTGTGATGGATGTTATCTGATTGACAGAAAATTTCTTTTCCAAAGGATCAATATGCGATTTCCTTGCAGATATACAAATGGGGGTACACCTGAGAGGAATCACCACTACACATTACTTGATGGGGAGATGATTATTGACACAGATCCACATACACATAAGCAAGAGAGAAGATACCTCATTTATGATTTGATAGCAATCAATCAAGTCTCTTTGACAGAGCTGCCGTTCTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATTGAACCTCGTAACATGGAACGTGAGGGACTCTCAAAGAGTATAAATCCTTATTATAGATATGACTTGGAACCATTTAGTGTGAGGAGGAAGGGTTTTTGGTTACTATCTACTGTGTCAAAGCTCCTTCATAAATTCATTCCACAACTATCGCATTCGTCAGATGGTCTTGTATTCCAGGGTTGGGATGATCCATATGTCCCTCGCACACATGAAGGTCTTCTGAAGTGGAAATACCCTGAGATGAACTCTATCGATTTCCTCTGTGAGGTGGGAGATGGTGATCGTCCCTTGCTTTTTCTGTTTGAACGTGGAAGGAAGAAGTTTATGGAAGAGAGTGTTATTTTTAAAGATGCATCGGACATATCTTCCTATTCCGGGAAGATCATTGAATGCTACTGGGATTCCGCGGAGCATCATTGGGTCTGTATGCGGATCAGAATAGACAAAGCAACTCCAAATGATATCAATACCTATAGAAAGGTAATGCGAAGCATAAAGGATAACATCACAGAAGATGTCTTATTGAATGAGATCAATCAGATCATTCGGCTACCATTGTATGCAGACAGAATACAAAGGGATATCAAGGCTCACCAGCATATGGTCTCTTCACGGCGCAAGTGA 1905 0.4094 MSYHMHNNEDTRRGLKRKPPHMDRGQERRPYNMNSRPYDRNAVPDGWFDCPPHGQELGCIIPSKVPLGESFNDYIPGQKYTPKQAIQQQRVLGRELGLVIDLTNTTRYYPVSDWTKEGIGHVKIRCTGKDAVPDDESVKKFCDEVLDFCSKRTNAKKYILVHCTHGHNRTGYMIVHFLVRTESISVTEAINKFAWARHPGIYKQDYIDALYMYYHEKKPEDLVCPQTPEWKRISDPDFRGTAVPAVDNYGHIPEQENIVRNEVLTNDDVLGDPIPTNQLRAMQEVCYQLLKLGTGGRGRSQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITCDGCYLIDRKFLFQRINMRFPCRYTNGGTPERNHHYTLLDGEMIIDTDPHTHKQERRYLIYDLIAINQVSLTELPFYERWKLLEKEVIEPRNMEREGLSKSINPYYRYDLEPFSVRRKGFWLLSTVSKLLHKFIPQLSHSSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSIDFLCEVGDGDRPLLFLFERGRKKFMEESVIFKDASDISSYSGKIIECYWDSAEHHWVCMRIRIDKATPNDINTYRKVMRSIKDNITEDVLLNEINQIIRLPLYADRIQRDIKAHQHMVSSRRK 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02739 634 CDD RNA_5'-triphosphatase 46 212 - -
Pumo5g02739 634 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 139 208 IPR000387 GO:0016311|GO:0016791
Pumo5g02739 634 MobiDBLite consensus disorder prediction 1 34 - -
Pumo5g02739 634 Gene3D Protein tyrosine phosphatase superfamily 18 237 IPR029021 -
Pumo5g02739 634 PANTHER MRNA-CAPPING ENZYME 38 615 - -
Pumo5g02739 634 FunFam mRNA capping enzyme family protein 39 251 - -
Pumo5g02739 634 FunFam mRNA capping enzyme family protein 503 611 - -
Pumo5g02739 634 CDD Adenylation_mRNA_capping 277 505 IPR001339 GO:0004484|GO:0005524|GO:0006370
Pumo5g02739 634 FunFam mRNA capping enzyme, putative 265 502 - -
Pumo5g02739 634 SUPERFAMILY Nucleic acid-binding proteins 507 619 IPR012340 -
Pumo5g02739 634 Pfam mRNA capping enzyme, C-terminal domain 534 602 IPR013846 -
Pumo5g02739 634 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 43 231 IPR029021 -
Pumo5g02739 634 MobiDBLite consensus disorder prediction 1 37 - -
Pumo5g02739 634 SMART dsp_5 76 216 IPR020422 GO:0006470|GO:0008138
Pumo5g02739 634 PIRSF mRNA_capping_HCE 30 634 IPR017074 GO:0004484|GO:0006370|GO:0140818
Pumo5g02739 634 Gene3D DNA ligase/mRNA capping enzyme 265 502 - -
Pumo5g02739 634 Pfam mRNA capping enzyme, catalytic domain 306 504 IPR001339 GO:0004484|GO:0005524|GO:0006370
Pumo5g02739 634 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 282 505 - -
Pumo5g02739 634 ProSitePatterns Tyrosine specific protein phosphatases active site. 161 171 IPR016130 GO:0016311|GO:0016791
Pumo5g02739 634 Pfam Dual specificity phosphatase, catalytic domain 94 214 IPR000340 GO:0008138|GO:0016311
Pumo5g02739 634 Gene3D - 503 611 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02739 Pumo-Chr5 74075092 74084105 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02739 18 624 Protein tyrosine phosphatase (PTP) family AT3G09100 61.974 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02739 K13917 - gmx:100778292 1255.35