Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02729 ATGTTGTTCTTCTCGTACTTCAAGGATTTGGTGGGGAGGGAAGTAACCGTGGAGCTGAAGAATGATTTGGCCATCAGAGGGACGTTGCATTCTGTTGATCAGTACCTCAACATCAAGCTCGAAAACACTCACGTTGTCGATCAAGAAAAGTACCCTCACATGCTTTCTGTAAGAAACTGCTTCATCAGAGGTTCGGTAGTGAGATATGTGCAATTGCCTCCAGAAGGGGTGGACATTGAACTATTGCACGATGCCACAAGAAGAGAAGCTAGGGGCGAATTCGGTTGGCTTCCATATGGTGGATGTTATCGTTCCTACTACAGAAGTAAACTCTTTTCAGATCTTAGTGCGTCAGATATTGGAAGTGATGATCCAGACATCGTCTTTAAAAAAAATGACTTTAATTTTTATAAAAGACTCATCCTTCCCACACTTCTTTTCTCTCACACTTTCCCAGTCCCTCACACTTCTCTTCTCTTCCCCGGATTTAGATCACCACCCCTCCTCGGTTGCAACCCACCCCTCTCAAATCCATCGCCCTTGACTATGGCTTCTGCGCCTTCCGCCCTCAACATCGTCCCCAACGAGGCCTCCATCACCGCTGTTGTGGGCCTTGCCGAGGCCAAGGGCAACGTTAATTACGCCTTTGAATTGGTGAAGAGCATAAGCAAGAAGTACAATGCATTCACGACATCCAAGGTTGGGGGCTTTTTAAGGCCCCTCATAACATGGGGTCACAAAATATGGGGTTATTATGTGGGGCCAGATGGGTCAGCCCTCGAGCTCAGGGCCATATTGACAGGTCTAAAACGCTGCTTCTCCAACGGCATGTCCTGCGCCGCGCACCACCCTTTCGCCTCCATCCCCTTTAGCCTTAGCACACGCATGTGCATCGAGCAGAACCTCGCGCTTCTCCAAACCAAACTCGCCCTTGCTGTCATGGTTCAACATTTTAGTTTTAGGTTGGCACTGACCTATTGCCACATGCCAACGGTCCTCATGTTGCTCTGCCCTTAG 1017 0.4877 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTHVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPEGVDIELLHDATRREARGEFGWLPYGGCYRSYYRSKLFSDLSASDIGSDDPDIVFKKNDFNFYKRLILPTLLFSHTFPVPHTSLLFPGFRSPPLLGCNPPLSNPSPLTMASAPSALNIVPNEASITAVVGLAEAKGNVNYAFELVKSISKKYNAFTTSKVGGFLRPLITWGHKIWGYYVGPDGSALELRAILTGLKRCFSNGMSCAAHHPFASIPFSLSTRMCIEQNLALLQTKLALAVMVQHFSFRLALTYCHMPTVLMLLCP 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02729 338 SMART Sm3 5 72 IPR001163 -
Pumo5g02729 338 Pfam Cytochrome P450 280 322 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo5g02729 338 SUPERFAMILY Cytochrome P450 281 328 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo5g02729 338 ProSiteProfiles Sm domain profile. 2 76 IPR047575 GO:0003723
Pumo5g02729 338 Gene3D Cytochrome P450 272 336 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo5g02729 338 SUPERFAMILY Sm-like ribonucleoproteins 3 101 IPR010920 -
Pumo5g02729 338 Pfam LSM domain 7 71 IPR001163 -
Pumo5g02729 338 CDD LSm2 2 90 IPR016654 GO:0006397
Pumo5g02729 338 PANTHER SNRNP CORE PROTEIN FAMILY MEMBER 1 92 IPR016654 GO:0006397
Pumo5g02729 338 FunFam U6 snRNA-associated Sm-like protein LSm2 1 94 - -
Pumo5g02729 338 Gene3D - 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02729 Pumo-Chr5 73947863 73955372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02729 273 338 Cytochrome P450 AT2G26710 62.121 1.33e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02729 K12621 - jre:109010925 183.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02729 5 73947863 73955372 Pumo5g02729 5 73947863 73955372 ECH