Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02710 ATGAAGGACGAGGTGGATTCCCCTGTTGGTGTTCTTGAGGACTATTTCAAGAGCTCAGAATCAGAACCAGGTTCTTCCAAAGAACCCAGTACTAGTGTGGAGGATTCTGATAAGTCAAAACCCGGTTCTAGGTGGCATGCGTTTCTTCAAGTGTTGAGGGTCAAATCGAAGAAGCCAATAGCCACATTGCATCCTCTCATTGTCCTCAAGCTTTCAAGAAGAATGAACAGTAGCACGAGGGAGACTATAATAGATGCAGATTCGTCCTTGCACAGGAAGATCTTCACTCACCATGAGATACAAATTGCAACCAATTACTTCGCCCAAGAAAATTTTATTGGAAAGGGTGGTTATGCTGAGGTTTACAAAGGGTGTTTGCCAAATGGTCAGCTGGTAGCGATTAAGCGGCTGACACGTGGAACAGAAAATGAAACTATAGGGGACTTCTTATCAGAACTTGGCATAATGGCTCATGTAAACCACTCCAATACTGCTAAGTTAGTTGGATATGGGGTGGAGGGAGGAATGCATTTAGTGCTTGAGTTGTCTGAAAAAGGGTGCTTAGCTTCAGTACTTAACGGTTCCAAGGAGAAACTACCATGGTCTATTAGGCAGAAAATAGCATTAGGAACAGCTAAGGGTATAATGTATCTTCATGAGGGTTGTCAAAGAAGAATTATCCATAGAGATATAACAGCAGCAAATATCTTGCTTACTGAGGACTTTGAGCCGCAGATTTGTGATTTCGGGCTAGCAAAATGGCTACCAGAGCAATGGACCCATCACACTGTTTCAAAAATTGAAGGGACTTCTGGTTATCTTGCTCCTGAATACTTGCTTCATGGGATAGTGGATGAGAAAACAGATGTATTTGCCTTTGGTGTAGTGCTATTAGAACTAGTCACAGGGCGGCGAGCACTTGATCATTCACAACAACAAAGCCTTGTTTTTTGGGCAAAACCTTTGCTGAAAAATAATTATATTAGGGAGCTGATTGATCCTTCATTAGCCGATGATTTTGACTGTCGGCAGATTAAAATTATGGTCTTGGCAGCTTCTTTGTGCATTCAACAATCCTCTATTCGTCGTCCTTCTATGAAACAGGTTGTACAGCTCTTGAATGGTAACCTTAGCTGCTTTAAGCTCACGAAGAAATCTCAACCTCCATTCTTCCTAAAAGTCTTTCAAGAAGAGCTCCTTGATGATTCTGATTAA 1215 0.4181 MKDEVDSPVGVLEDYFKSSESEPGSSKEPSTSVEDSDKSKPGSRWHAFLQVLRVKSKKPIATLHPLIVLKLSRRMNSSTRETIIDADSSLHRKIFTHHEIQIATNYFAQENFIGKGGYAEVYKGCLPNGQLVAIKRLTRGTENETIGDFLSELGIMAHVNHSNTAKLVGYGVEGGMHLVLELSEKGCLASVLNGSKEKLPWSIRQKIALGTAKGIMYLHEGCQRRIIHRDITAANILLTEDFEPQICDFGLAKWLPEQWTHHTVSKIEGTSGYLAPEYLLHGIVDEKTDVFAFGVVLLELVTGRRALDHSQQQSLVFWAKPLLKNNYIRELIDPSLADDFDCRQIKIMVLAASLCIQQSSIRRPSMKQVVQLLNGNLSCFKLTKKSQPPFFLKVFQEELLDDSD 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02710 404 ProSitePatterns Tyrosine protein kinases specific active-site signature. 226 238 IPR008266 GO:0004672|GO:0006468
Pumo5g02710 404 Pfam Protein tyrosine and serine/threonine kinase 110 372 IPR001245 GO:0004672|GO:0006468
Pumo5g02710 404 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 184 387 - -
Pumo5g02710 404 ProSiteProfiles Protein kinase domain profile. 107 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02710 404 SUPERFAMILY Protein kinase-like (PK-like) 93 395 IPR011009 -
Pumo5g02710 404 Gene3D Transferase(Phosphotransferase) domain 1 184 387 - -
Pumo5g02710 404 MobiDBLite consensus disorder prediction 1 42 - -
Pumo5g02710 404 Gene3D Phosphorylase Kinase; domain 1 68 181 - -
Pumo5g02710 404 PANTHER OS08G0249100 PROTEIN 6 393 IPR046958 -
Pumo5g02710 404 ProSitePatterns Protein kinases ATP-binding region signature. 113 135 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02710 Pumo-Chr5 73662884 73666324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02710 93 376 Receptor kinase-like Gene Family AT1G34210 41.892 1.10e-66 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Pumo5g02710 PK_Tyr_Ser-Thr 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02710 - - gmx:100818913 721.465