Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02682 ATGGCTCCTGGAAGCAGTGTTTTCAAAGAAGTTCTTGAATCTCACCTGATGTCTTCAGATTATGAAACGGGAAAGGCTAAATCTGAGGCCAAGAGTAACAGTACATCTACAAAATCTAGCGTTGGGTTGAATGGAAAGAGTGGAGTTAGTTCAAACAATGGCGTGTACGAATTACTTGGATGCCCTGTTTGCAAGAATTTAATGTATCCCCCAATTCACCAGTGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAATATCTGCCCATCCTGTCATCATGATCTTGGAAATATAAGGTGTTTGGCTTTGGAGAAAGTGGCAGAATCATTGGAGCTTCCTTGCAGATATCAGAGTCTTGGTTGTCATGATATATTCCCGTACTATACTAAGCTCAAGCATGAGCAAAACTGTGGATTTCGACCATACAATTGCCCCTATGCTGGATCTGAGTGCTCAGTGATGGGTGACATTCCCACTCTTGTTGCCCATCTCAAGGATGATCACAAGGTTGACATGCATGATGGATGCACCTTCAATCACCGATATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTGTTTTCAATAGTTTTGGAAGGCATTTCTGCTTGCACTTTGAGGCGTTCCAGCTCGGCTCAGCTCCTGTGTATATGGCTTTTTTGCGATTTATGGGTGATGACAATGAAGCAAAGAAATTCAGCTACAGCTTGGAGGTTGGTGCAAATGGGCGCAAACTTATATGGCAAGGAATTCCAAGGAGCATTCGGGACAGTCATAGAAAAGTTCGAGATAGTCAAGATGGACTTATAATTCAGAGGAACCTAGCCCTTTATTTTTCTGGTGGAGAAAGACAGGAGTTGAAGTTGAGAATCACTGGTCGTATATGGAGAGAAGATTGA 930 0.4237 MAPGSSVFKEVLESHLMSSDYETGKAKSEAKSNSTSTKSSVGLNGKSGVSSNNGVYELLGCPVCKNLMYPPIHQCPNGHTLCSHCKVEVHNICPSCHHDLGNIRCLALEKVAESLELPCRYQSLGCHDIFPYYTKLKHEQNCGFRPYNCPYAGSECSVMGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKANPHEVENATWMLTVFNSFGRHFCLHFEAFQLGSAPVYMAFLRFMGDDNEAKKFSYSLEVGANGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWRED 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02682 309 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Pumo5g02682 309 SUPERFAMILY RING/U-box 53 103 - -
Pumo5g02682 309 FunFam E3 ubiquitin-protein ligase SINAT3 113 169 - -
Pumo5g02682 309 ProSiteProfiles Zinc finger RING-type profile. 61 97 IPR001841 -
Pumo5g02682 309 MobiDBLite consensus disorder prediction 22 45 - -
Pumo5g02682 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 168 IPR013083 -
Pumo5g02682 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 113 IPR013083 -
Pumo5g02682 309 MobiDBLite consensus disorder prediction 28 45 - -
Pumo5g02682 309 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 29 307 - -
Pumo5g02682 309 FunFam E3 ubiquitin-protein ligase SINAT5-like 13 112 - -
Pumo5g02682 309 SUPERFAMILY TRAF domain-like 114 306 - -
Pumo5g02682 309 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 169 302 IPR008974 GO:0005515
Pumo5g02682 309 FunFam E3 ubiquitin-protein ligase SINAT5-like 170 302 - -
Pumo5g02682 309 CDD RING-HC_SIAHs 59 97 - -
Pumo5g02682 309 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02682 Pumo-Chr5 73026897 73031666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02682 1 309 C3H Transcription Factor Family AT2G41980 79.612 0.0 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02682 K04506 - gmx:100813966 650.973