Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02677 ATGGAGCTAGCTTTGAGCTTAGGCGACAGACCCAAACCCTTCTCTTTGCCCACAAACAGTGATTTGGGTTTGTGCATAGCTCTGGGTGACGACAAAAGGGGTTCTTCAGATCCACCACCCGTTCAGCTCGACCTTCTTCCTTCAACACCCGTTCTTCCTTCTTCACACCTTCGAATTCCATGGCTCTCCGATGCACTGGGTATGGAACGTGTGACATCAGAGATTCCGGTGAGGGCGGTGGATGATACCGACGATGGCGCTGCACTTTCATCCCCCAACAGTGCAGTGTCATCTTTTCAGATGGATTTTTGCATCAGGAATAGTAGAAAGTCTTCTGAAGGTGCCAGCGACGACGACGAAAATGGCTCAACAAGGAAGAAACTCAGACTCTCCAAAGAACAATCAGCTTTCCTTGAAGACAGCTTCAAAGAACACACCACTCTCATTCCCAAGCAAAAACTTGCGCTTGCAAAACAGTTAAACCTCCGTCCCCGTCAAGTGGAAGTTTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAGACAGAGGTGGACTGTGAGTACTTAAAGAGATGCTGCGAGAGTCTGACAGAAGAGAATAGGAGGTTGCAGAAGGAACTGCAAGAACTGAGGGCATTGAAAACATGTCAACCATTTTACATGCAGCTTCCAGCTACCACCCTCACCATGTGTCCCTCTTGTGAACGCGTCGCCACCAACACCGCCGCCGTCACTGCCACCACCAACAGCAACAATAATGCGTCTGCCCCCACCAACAATAATAGTGTTTCTCAAATCTCTGCTGCGTTGTCTGTTGACAAGCCCAGAATATTGCCCTGA 843 0.4911 MELALSLGDRPKPFSLPTNSDLGLCIALGDDKRGSSDPPPVQLDLLPSTPVLPSSHLRIPWLSDALGMERVTSEIPVRAVDDTDDGAALSSPNSAVSSFQMDFCIRNSRKSSEGASDDDENGSTRKKLRLSKEQSAFLEDSFKEHTTLIPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKELQELRALKTCQPFYMQLPATTLTMCPSCERVATNTAAVTATTNSNNNASAPTNNNSVSQISAALSVDKPRILP 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02677 280 Gene3D - 117 186 - -
Pumo5g02677 280 MobiDBLite consensus disorder prediction 109 128 - -
Pumo5g02677 280 Pfam Homeobox associated leucine zipper 181 215 IPR003106 GO:0006355|GO:0043565
Pumo5g02677 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 35 259 - -
Pumo5g02677 280 CDD bZIP 174 213 - -
Pumo5g02677 280 MobiDBLite consensus disorder prediction 111 128 - -
Pumo5g02677 280 Pfam Homeodomain 125 179 IPR001356 GO:0003677
Pumo5g02677 280 SUPERFAMILY Homeodomain-like 114 182 IPR009057 -
Pumo5g02677 280 CDD homeodomain 125 182 IPR001356 GO:0003677
Pumo5g02677 280 FunFam Homeobox-leucine zipper protein 18 110 186 - -
Pumo5g02677 280 Coils Coil 187 214 - -
Pumo5g02677 280 SMART HOX_1 123 185 IPR001356 GO:0003677
Pumo5g02677 280 ProSitePatterns 'Homeobox' domain signature. 156 179 IPR017970 GO:0000981|GO:0006355
Pumo5g02677 280 ProSiteProfiles 'Homeobox' domain profile. 121 181 IPR001356 GO:0003677
Pumo5g02677 280 SMART halz 181 224 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02677 Pumo-Chr5 72936841 72938651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02677 117 238 Homeobox Transcription Factor Family AT4G37790 79.508 3.65e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo5g02677 Homeodomain 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02677 K09338 - gmx:100784703 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02677 5 72936841 72938651 Pumo5g02677 5 72936841 72938651 ECH
Pumo5g02677 5 72936841 72938651 Pumo3g02908 3 51362801 51365010 PCT