Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02676 ATGGAGGAAGAGACCTCCGATGCAATGAACCTTGATTTGAATCTGGGCCCAGGCCCAGAGCCCGAAACTGGGCCCATAAGCAATGAAGCTGTGAACTTGGACGATTGGATAGGGGAGCCTCTTCAGAGAATTAGCGAAGCTGTGAGGTTTAGGGCACGGCAACGGTGGCGATGGCGCCAAATTCCGCTACCGCATCATGAATTTCATGCTCACTTTCCAACTGAAGCTATGCGGCATTTTCCAATACCACCCGAGGCTCACAATATCTCCATGGAATTGAACCAGTTTTTGGTCAATTCTGGCAATGGAAGTGCCTTGCAGGCTGGGGAAGGCAGTGTGGCGGCCGAGGAGAGGATGGAGGAGGTGCCGAAGGCGTGTGAGAATGTCAATGGTGTGGCGGAGGACGAGGCATCGCAGAAGAAGGATGATGTAGAAAAGGGTAGTGGCATTGATGGGGACTTTTTTGATTGTAACATCTGTTTGGACCTGGCTAGGGATCCTGTTGTAACTTGTTGTGGTCATTTGTTTTGTTGGCCATGTTTGTATAGGTGGCTGCATCTGCATTCGGATGCGAAGGAATGTCCAGTTTGTAAGGGAGAGGTGGCACTTAAAACTGTTACCCCAATATATGGCCGTGGGAACAATGTCCGTGGTCTTGAGGAGGATTCTGGTCTCAAGATCCCTCCCAGGCCCCTAGCAAGGAGGGTTGAGAGTCTGAGACAAACCCTTCAGAGAAATGCATTTCCACTCCCCGTGGAAGAGATGATGCGGCGTCTTGGAAGCAGAATCGATCTTAGTCGTGATTTGGTTCAGCCACATGAACCGGAAGGTGCCCGTGAAACGGCGGAGAGAACCACTTCCTTGCTAAGTAGGTTCTTGACCGCACGAGGAATGCGGAGAGAGCATCAGAATCTAGGGGTACCCCCAGAGGATGTAATGGGTTTGGCACAGAACAATGTTAATGCTTCTGAGGCAGGGGATACCCGAAGTAGGGTGCAATCCCATTTGCTTCGAAGAACACAATCCCACAGAGCAACACTTTCTACACTTTCATCAGCACTGACTTCCGCTGAAAGGTTAGTTGAGGCATATTTCCGTAGCAGCAGTAGGAACCATGAACAACCTCCTCCTCCAGTTGATGACAGAGATTCATTTTCAAGCATTGGTGCTGTTATAAATTCAGAGAGCCAAGTGGACACTGCTGTAGAAATTGATTCCATGGTATCCTTGTCAACATCCTCTTCTAGGAGGAGGAGTGATGCTTCAAGAGTGTCTGATGTGGATAGTGGAGATTCCCGTGCTCCAAGGCGCAGACGTTTGAACTGA 1326 0.4977 MEEETSDAMNLDLNLGPGPEPETGPISNEAVNLDDWIGEPLQRISEAVRFRARQRWRWRQIPLPHHEFHAHFPTEAMRHFPIPPEAHNISMELNQFLVNSGNGSALQAGEGSVAAEERMEEVPKACENVNGVAEDEASQKKDDVEKGSGIDGDFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVALKTVTPIYGRGNNVRGLEEDSGLKIPPRPLARRVESLRQTLQRNAFPLPVEEMMRRLGSRIDLSRDLVQPHEPEGARETAERTTSLLSRFLTARGMRREHQNLGVPPEDVMGLAQNNVNASEAGDTRSRVQSHLLRRTQSHRATLSTLSSALTSAERLVEAYFRSSSRNHEQPPPPVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSSSRRRSDASRVSDVDSGDSRAPRRRRLN 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02676 441 FunFam E3 ubiquitin-protein ligase RMA3 125 246 - -
Pumo5g02676 441 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Pumo5g02676 441 MobiDBLite consensus disorder prediction 1 22 - -
Pumo5g02676 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 242 IPR013083 -
Pumo5g02676 441 ProSiteProfiles Zinc finger RING-type profile. 157 198 IPR001841 -
Pumo5g02676 441 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 127 338 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pumo5g02676 441 Pfam Zinc finger, C3HC4 type (RING finger) 157 197 - -
Pumo5g02676 441 CDD RING-HC_AtRMA-like 155 198 - -
Pumo5g02676 441 SUPERFAMILY RING/U-box 152 210 - -
Pumo5g02676 441 MobiDBLite consensus disorder prediction 408 441 - -
Pumo5g02676 441 MobiDBLite consensus disorder prediction 366 385 - -
Pumo5g02676 441 MobiDBLite consensus disorder prediction 419 441 - -
Pumo5g02676 441 SMART ring_2 157 197 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02676 Pumo-Chr5 72913133 72915551 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02676 1 432 C3H Transcription Factor Family AT3G58030 51.786 1.17e-137 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02676 K10666 - gmx:100811099 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02676 5 72913133 72915551 Pumo5g02676 5 72913133 72915551 ECH