Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02648 ATGAACGAGAACAAGATTGATTGGGGAGGATTGATTCAACAAAGTCATGGACTAAGTGGGGATTTTAATTCTGAGTTTGGCAATCGTTACTGTCAGTATTTTGATATCAGACAGGCTTGTAATATGGGACCACTTGCCATGGTTGGAGGAGAAGCTACAACAGATCAGTTACAAAACATAGGCCATGTCAAATCATCTGGCACCATTATGAGCCGTTTTGAGTCACCAGCTTCTGCCTTTTATGCTGCAGAAAACTGCATGGGGTTTGCAGAATATGATTGCCAAGTTGGTGTTCACTCTTTGAGCTCTCAGCTATGTAAGATTAATGATTTGGAATTTCCTTTGTATCAATCTCCTAGGGAAAACCTTTTCTTGGATTCAGCAAACCAACCTGACCCCAACTTTGACTTGTCAAACACTTTGCAATCCATAGTGAAATCTCAATTGAATAGTAATCAATGTCGTAGATCCCCTGAAAAGTCCAATAAAACTTCATGTGGGAATTTTCCCAGTTCCAAATTCCTTCCAATTGAACAGCAGAAGTTGTTCATTGATGGTCTTATCAGGGGCTCATCATTTCCTAACAAAAGAAGTCAGGACCATATGGTTTCTCGTGGATCTTTCAATTTATCTGTTCCACAGCTGAGATTCTCTTCTCAGATTGAGAAGTTGTCTCCAACACTTTCATCAGGTAGTGTGACTACTATTGGAAACTCTGCTTCTAATGGGGCAGTGTCAAGTAAAACACGTATAAGATGGACTAAGGATCTTCATGAGAAATTTGTTGAGTGTGTGAATCGCCTTGGAGGCTCTGAGCAGGCAACACCAAAAGCTATATTAAAGATGATGGACTCAGATGGTTTGACTATCTTCCATGTCAAAAGTCATTTGCAGAAATATAGAATTGCAAAATTCATTCCAGAGTCCAGTCACGGGAAATCTGACAAAAGAACCCACACAAAGGATGTGCATCATCTTGATGTCAAAACTGGCATACAAATTAGAGAGGCACTTAAGCTGCAATTAGATGCTCAAAGGTGTCTTCATGAACAATTAGAGATTCAGAGAAAATTACAGTTGAGAATTGAGGAACAAGGCAGGGAACTGAAGAAAATGTTCGACCAGCAGCAAAAGACAAGTAATAACCTCTCGAATACTCAGAATTCAACTATTGATGAGGCATCAATTAGTCACAAAGATGGTGAGGTTTCTGTTTCCGAAGGGGCCAACAATTCCTTCTTCCCTTCCAAGACTTCTCCAAGCCCATAA 1269 0.4003 MNENKIDWGGLIQQSHGLSGDFNSEFGNRYCQYFDIRQACNMGPLAMVGGEATTDQLQNIGHVKSSGTIMSRFESPASAFYAAENCMGFAEYDCQVGVHSLSSQLCKINDLEFPLYQSPRENLFLDSANQPDPNFDLSNTLQSIVKSQLNSNQCRRSPEKSNKTSCGNFPSSKFLPIEQQKLFIDGLIRGSSFPNKRSQDHMVSRGSFNLSVPQLRFSSQIEKLSPTLSSGSVTTIGNSASNGAVSSKTRIRWTKDLHEKFVECVNRLGGSEQATPKAILKMMDSDGLTIFHVKSHLQKYRIAKFIPESSHGKSDKRTHTKDVHHLDVKTGIQIREALKLQLDAQRCLHEQLEIQRKLQLRIEEQGRELKKMFDQQQKTSNNLSNTQNSTIDEASISHKDGEVSVSEGANNSFFPSKTSPSP 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02648 422 MobiDBLite consensus disorder prediction 404 422 - -
Pumo5g02648 422 MobiDBLite consensus disorder prediction 375 394 - -
Pumo5g02648 422 MobiDBLite consensus disorder prediction 371 422 - -
Pumo5g02648 422 Gene3D - 247 306 - -
Pumo5g02648 422 SUPERFAMILY Homeodomain-like 246 302 IPR009057 -
Pumo5g02648 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 247 305 IPR017930 -
Pumo5g02648 422 FunFam Myb family transcription factor 247 305 - -
Pumo5g02648 422 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 246 401 IPR044848 GO:0003700
Pumo5g02648 422 Pfam Myb-like DNA-binding domain 252 301 IPR001005 -
Pumo5g02648 422 Coils Coil 335 355 - -
Pumo5g02648 422 Pfam MYB-CC type transfactor, LHEQLE motif 332 379 IPR025756 -
Pumo5g02648 422 NCBIfam myb-like DNA-binding domain, SHAQKYF class 248 303 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02648 Pumo-Chr5 72583035 72586190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02648 237 397 G2-like Transcription Factor Family AT3G04450 51.807 3.49e-50 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo5g02648 Myb_DNA-binding 1.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02648 - - gmx:100527257 714.146