Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02647 ATGTATCAGTATAGTTCCCAGATGTACGGAACTGAATGGGAGTCCTACATGGGGATTAGCAACCTAACCAAGGTTGTTGGATCAGAATATCTGAGTTTTGAGCCCACAAAATCACCCTTCAACATTGTGACAACTCCCCTTCAAACCTCACAAGGTTTTTGTGCAAGTGCAACCAAAAACCTTGTGAGTTTTCAAGCTCAACAGCATGATCATCAGCATCAGATTGAAGTTCCTGGTTGGTGCTTTGAGTTTCCAAAGACAACAACAGACTCTCACATGCTGAATATTCGCCAAGCCTCTGGAGATAACTTCACCACAATCATCACCACCAAACAAGATCGACCCTCCTCTCAATTCACAAGCTCCTTGTGCCCGGTTGATAAATCATTCTTGTCTAGCAGTGGAGCAGATTGTCCTTCTTCTTCTGAAAAATATTGTAAAGTTGCCTCTTATTCCGAAAAATATAGTGATATTCAGCCTGACAGTATGCCGTATTATGATCAATTTTCACAAGAAGATAAATTGCTGAGGGATGATGCTGGCACAGATGAAAGGCCCGTTGAAATTTCCTTTCAGAGAAACCAGTTGGACTCGTGTACAAAGCGAGAAAAGCAGGCTCCTCATCGACTTTGTGGGGTTGCCTGTGTAGCTTCTAGCAACTCTGCTTCTAGGAGAGGCAAAAGAAGAATAAAATGGACCAAAGATCTGCATGAGCCATTTATGATGATTGTTAATAGCCTTGGTGGTCCCGAAAAGGCAAAGCCTAAGGCTATACTAGAGATGATGAAATCAGATTTGCTGTCCATTTCTCACGTTAAAAGTCATTTACAGAAGTGTAGGTCTACAATACACATGCACAAGGCTTTGCAGGAAAGATCTGAGGAAGGACAGAGAACAGATGGGGTGGCTGAGCTTCAAGTCAAAATCCACATGCAAATTGAGGAATCACGGCAACTACAACTAGAGGTCCGGAGGAATATATTCCAACAACTAGAGATGCAACGAAATTTGCAAACGCTAATTCAAGAGCAGAGCCAGCAGCTCAAAGTAATGTTAGATTACCAAAAGGAAAGAACCAAAGTGGAGAAGACCCTTGGCACAGAACTGGAAGCGACTGTCCCCAAATGA 1128 0.4273 MYQYSSQMYGTEWESYMGISNLTKVVGSEYLSFEPTKSPFNIVTTPLQTSQGFCASATKNLVSFQAQQHDHQHQIEVPGWCFEFPKTTTDSHMLNIRQASGDNFTTIITTKQDRPSSQFTSSLCPVDKSFLSSSGADCPSSSEKYCKVASYSEKYSDIQPDSMPYYDQFSQEDKLLRDDAGTDERPVEISFQRNQLDSCTKREKQAPHRLCGVACVASSNSASRRGKRRIKWTKDLHEPFMMIVNSLGGPEKAKPKAILEMMKSDLLSISHVKSHLQKCRSTIHMHKALQERSEEGQRTDGVAELQVKIHMQIEESRQLQLEVRRNIFQQLEMQRNLQTLIQEQSQQLKVMLDYQKERTKVEKTLGTELEATVPK 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02647 375 Gene3D - 226 283 - -
Pumo5g02647 375 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 214 361 IPR044848 GO:0003700
Pumo5g02647 375 NCBIfam myb-like DNA-binding domain, SHAQKYF class 227 281 IPR006447 GO:0003677
Pumo5g02647 375 SUPERFAMILY Homeodomain-like 226 282 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02647 Pumo-Chr5 72573431 72576224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02647 216 355 G2-like Transcription Factor Family AT4G28610 43.662 1.81e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo5g02647 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02647 - - gmx:102662952 640.188