Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02646 ATGGAGGATTTGAAGAAGAGAAAGCTGGACGAAGCGGGCAACGGTGATTTTGCTTCCAAGGAAGAGCTTCGTTTCCTCATTGAACCTCTCGCTAAACCCCAGCTCGTCGATCTTCTAGCTAAATTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGTCCATCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCACTTCAGAAACTTTGCGTGCTGCATTTCAAGAGCATGGAGAAATTGAGGAAGGAGCTGTGATCTATGATAAAGCGACAGGAAAATCCCGTGGCTATGGATTTATCACATACAAAAATATGGAATCAACTCAGCAAGCATTGAGAGCCCCTAGCAAGTTAATCGATGGAAGATTGGCTGTCTGTAATCTAGCTTGTGAGGGTCTAAGCGGAACAAGTAGTGCTCCTGATCTTTCCCTGAGGAAGCTTTATATTGGAAGCTTATCACCGGAAGTCACAAGTGAAATGCTGCTTAACTATTTTTTGAGGCATGGTGAAATAGAGGAAGGTTCAGTAGCATATGACAGGGATACAAATGAATCACGTGGTTTTGGCTTTGTCACATACAAGACAGCGGAGGCTGCGAAGAAGGCCATAGATGACCTAGAAAAGACACTTGGGGGAAGGAATATAGTTGTAAAATATGCTGATTCCCACAAGGGTAAAACTGGCCAGCCGCCATTTCCTGCTGGAGTGGTTCCAATGGCAGCCTTACCTATGACCCCGGGATATATGCAGCCTGGAAAAGCTCATGTTAGTACAGGGCCCCCAATCAATTATAGTTACCCCCAAACTGTAGCACCATATTCTGCATCTCCTTATCCAAACCCTCCCACTGCACCTTCTCCTTACCCAACACAAGGGCAGATTCCTTATCCTCCAGTTTCTGCAAAGAAAGACCAACATGGGTTTCCGCCTACTCAACCTGTTGGAATGAACAACTACCCTTATTACTATCCCAAGCAATGA 1011 0.4491 MEDLKKRKLDEAGNGDFASKEELRFLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQQALRAPSKLIDGRLAVCNLACEGLSGTSSAPDLSLRKLYIGSLSPEVTSEMLLNYFLRHGEIEEGSVAYDRDTNESRGFGFVTYKTAEAAKKAIDDLEKTLGGRNIVVKYADSHKGKTGQPPFPAGVVPMAALPMTPGYMQPGKAHVSTGPPINYSYPQTVAPYSASPYPNPPTAPSPYPTQGQIPYPPVSAKKDQHGFPPTQPVGMNNYPYYYPKQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02646 336 Gene3D - 142 240 IPR012677 -
Pumo5g02646 336 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 132 IPR000504 GO:0003723
Pumo5g02646 336 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 224 IPR000504 GO:0003723
Pumo5g02646 336 FunFam UBP1-associated protein 2C 142 240 - -
Pumo5g02646 336 PANTHER GEO13361P1-RELATED 47 143 - -
Pumo5g02646 336 MobiDBLite consensus disorder prediction 285 323 - -
Pumo5g02646 336 FunFam UBP1-associated protein 2C-like 60 141 - -
Pumo5g02646 336 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 132 IPR000504 GO:0003723
Pumo5g02646 336 SMART rrm1_1 65 137 IPR000504 GO:0003723
Pumo5g02646 336 SMART rrm1_1 156 228 IPR000504 GO:0003723
Pumo5g02646 336 Gene3D - 55 141 IPR012677 -
Pumo5g02646 336 MobiDBLite consensus disorder prediction 285 304 - -
Pumo5g02646 336 CDD RRM2_NsCP33_like 156 230 - -
Pumo5g02646 336 SUPERFAMILY RNA-binding domain, RBD 58 141 IPR035979 GO:0003676
Pumo5g02646 336 SUPERFAMILY RNA-binding domain, RBD 149 243 IPR035979 GO:0003676
Pumo5g02646 336 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 232 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02646 Pumo-Chr5 72554017 72558169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02646 147 266 C2H2 Transcription Factor Family AT2G19380 32.283 6.46e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02646 K12741 - gmx:100776344 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02646 5 72554017 72558169 Pumo5g02646 5 72554017 72558169 ECH