Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02642 ATGGCTTCAGACGCCAAACTCTCCTCTTCTTCGGAGTCACTCAACGGTTTGAAATTCGGCCAAAAAATCTATTTTGAGGATGTGGGCCTTGCTACTCCAGCCACCTCTCTTACTACTTCTTCTGCTGCTCCTGCTTCTTCCTCTTCCTCTTCTTCAAGGAAGGGAAGAGGTGGGTCTGTTCAACCAGCTCAGCCTCCTAGGTGTCAAGTTGAAGGGTGCAAAGTAGATCTGAGTGATGCAAAAGCTTACTATTCTAGGCACAAGGTCTGTGGCATGCACTCTAAATCCCCCACAGTCATTGTTGCTGGACTTCAACAAAGGTTTTGTCAACAGTGTAGCAGATTTCATCAGCTTCCTGAGTTTGATCAAGGAAAAAGAAGTTGCCGCAGGCGACTAGCTGGCCATAATGAACGGCGGAGAAAGCCCCCACCCAGCTCCCTCTTAACCTCTCGCTATGCCAGACTTTCTTCATCTGCTTTTGATAATGGTGGCAGAGGTGGCAATTTTCTGATGGAATTGGCTTCATACCCAAAGCTTAGTCTGAGAAATTCACTTCCAACTCCTAGATCATCTGAGCTAGCTCCTGGAAATCAAACCTCCACACTTAGCTGGCATGTCAACTCAGAGACATCATCTGACCTTTTCTTGCAAGGTTCAGTGGGTGGGACAAGCTTCGCCAGTCCCGGACATCCTCCGGGGGAAAGTTACACTGGGGTCACTGACTCGAGCTGTGCTCTCTCTCTTCTGTCAAGTCAAACATGGGGTTCTAGAAACACAGCACCAAGTCTTGGGTTGAGTAACATGATAAATTTCAATGGGACACCCATGACACTTGCTGCATCATCTCATGGTACATCAATCCATCAACTTCCAAATACCTCATGGTGTTTTAAGGGCATTGATTCTGGTAACTGTTCGCCCGAGGTGGTCCCTGATCTAGGCCTGGGTCAGCTTTCACAGCCTCTCAATAGCCAACTTCCCGCTGAGCTGGACCTGTCCCAACAGGGCAGGAGGCATTATATGGATCTAGAACAGTCCAGGGCATATGAATCTGCTCATTGGTCACTTTAA 1071 0.4809 MASDAKLSSSSESLNGLKFGQKIYFEDVGLATPATSLTTSSAAPASSSSSSSRKGRGGSVQPAQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPTVIVAGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSRYARLSSSAFDNGGRGGNFLMELASYPKLSLRNSLPTPRSSELAPGNQTSTLSWHVNSETSSDLFLQGSVGGTSFASPGHPPGESYTGVTDSSCALSLLSSQTWGSRNTAPSLGLSNMINFNGTPMTLAASSHGTSIHQLPNTSWCFKGIDSGNCSPEVVPDLGLGQLSQPLNSQLPAELDLSQQGRRHYMDLEQSRAYESAHWSL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02642 356 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 325 IPR044817 GO:0003677
Pumo5g02642 356 Gene3D - 58 129 IPR036893 GO:0003677|GO:0005634
Pumo5g02642 356 MobiDBLite consensus disorder prediction 36 58 - -
Pumo5g02642 356 SUPERFAMILY SBT domain 66 147 IPR036893 GO:0003677|GO:0005634
Pumo5g02642 356 ProSiteProfiles Zinc finger SBP-type profile. 65 142 IPR004333 GO:0003677
Pumo5g02642 356 MobiDBLite consensus disorder prediction 36 67 - -
Pumo5g02642 356 FunFam Squamosa promoter-binding-like protein 14 59 129 - -
Pumo5g02642 356 Pfam SBP domain 68 141 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02642 Pumo-Chr5 72494963 72498921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02642 17 356 SBP-box Gene Family AT2G42200 43.684 3.17e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pumo5g02642 SBP 9.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02642 - - gmx:100807165 626.32