Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02641 ATGATTTGCGACTTCCTCTATGTGTATCTTAACCTCGTTCTCTTCTCGTCAATTTTGATTTCTCAGAGCTTCGCGTTCACACATCCACCTGAAGTGTTAGCACTCCAGGATCTATACAGGACCTTTAACTATCCACTGGTGCTCAAAGGATGGAATGGTAGCGATCCTTGTGGGGAGTCTTGGACAGGAGTTGTTTGTTCTGGACCATCAGTGATACAATTAAAACTTAAAGGATTAAACCTCACTGGATATATTGGAAGTCTGCTATATAATCTACCTAACTTGAAGCAACTTGATGTCAGTTCAAATAACCTCGTGGGCGAAATACCATTCGGTTTACCCCCCAATGTCACACATATGAATTTAAGCCACAATTTACTACATGGACCCATTGGTGATGTATTTACTGGTTTAGATAATCTCAAAGAAATGGACCTTTCATACAATAATTTCTCAGGAGATCTGCCGTGCTCATTTGGTTCCTTAAGAAACCTTGCCAGATTGTTCCTGCAGAAAAACAAATTCACTGGATCAGTCGCTTACTTGGCTGAACTTCCACTAACAGATTTGAACATTCAAGAAAATTTTTTTAGTGGCATTCTTCCACAGCATTTTCAATCCATACTGAATTTATGGATTGGAGAGAATAAATTCTATGTGGCGGACAACTCTCCTCCCTGGAGTTTTCCTCTGGATGCTGTATCAGTTGAGCATAACACTAGTAGCCCACCCACAACAAAGGCAAATGCCATAAAGAATTATTCTCCTCCCAGAGTAAGTGAGCACAAGAAGAAACGTATAGGTCCTGGAGGAATAGCATGTATGATTGGTGGAGGAACACTGATGGCCACAGCGGTGGCACTCTTTGTTGCAACCCGTTTGAATAAACATGGTGTAGAGAGCCTGAACTCGAAGAGCTCAGAAAGCAACCATGGCTCATTTCATTCTCATCCGACCAGTGCAACCATAGGGATCTCTTCTACCGCACTAGAGGAGAGGGAGAGCCCACAAATCCCCCCCTTTAGTTCTGCATCCCTTTTGGGTCCTGTGGGATTGCCTTCCAATACAGAGGAACCATCAAGAAGAAGTTTTTCCAAAAGAATCAGATCCACTGGAAGAACGAAAATTTACACAGTAGAGGAGCTTCAGTTGGCTACTAATTGCTTCAATGAAGCCAACATTCTGGGAGAGGGATCTCTTGGCCCAGTTTATAGAGCTAAATTTCCGGATGGCAAAATTTTGGCCGTGAAGAAGATAAACATGGCGGGCCTGTCTTTCAGAGAAGAGGAAAAGTTCTTGGATGTCATTTGCACGGTTTCCCGACTGAAGCACCCCCACATCGTAGCACTCAGTGGTTACTGTTTGGAGCATGGAAAACATCTTCTTGTTTACGATTACGCTGGAAATTTCACTCTAAACGATGCTCTTCACAATGAGGCATACAAACCTCTGTCGTGGGTACATCGTCTCAAGATTGCTCTCGGTGTTGCTCAGGCTCTGGACTATTTGCACTCAGCGTCCTGCCCTCCCGTGGCCCACGGCAACTTGAAGGCTGCCAATGTTCTACTGGATGAAAATTTCACGCCTCGTGTCTGTGACTGCAGCTTGGCTATTTTGAGACCACTGAGCATCAATCAAGTCGAAATTCCGGCTAATGAGTTTATCATTGGAGAGATAGGGTACGTTGCACCAGATCATGGCCTACCAGGAACCAGCAGCAGAAAGAGAGACGTTTTTGCCTTTGGGGTATTGCTTCTGGAACTGTTAACAGGAAGGAAACCTTTCGATGGAGCCAGGCCAAGGGAGGAGCAATATCTGGTGAAATGGGCTCCACCCATGCTTCCTTATAGAGCGAGTTTGGAACAGCTGGTGGATCCCCGTATGAAAAGAACATTTTCATCCAAGGCTCTTTCTCGTTACGCTGATATCATCTCCCTCTGCATACAGGTATTAACACCTAATTGTTTTAAGTTAAACTCGTTAAGAAATTGCATTTACTCAATGGTTGCATTTACGCAGCCTGTAAGGCAACTCCGTCCTCCAATGTCCGAGGTTGTGGAGTCGCTTGAATGTTTGTACCAAAAGTTCAACATTGAAAAGAGCGATGTAGCAGATGGAACTGAACTCGATCCATTTGAGAGGTCTTTCCACTCAACCAACATATGCTTTATGGGTTCTCCAGCCGCAGTGAACCATGCATCAGCTTGA 2208 0.4434 MICDFLYVYLNLVLFSSILISQSFAFTHPPEVLALQDLYRTFNYPLVLKGWNGSDPCGESWTGVVCSGPSVIQLKLKGLNLTGYIGSLLYNLPNLKQLDVSSNNLVGEIPFGLPPNVTHMNLSHNLLHGPIGDVFTGLDNLKEMDLSYNNFSGDLPCSFGSLRNLARLFLQKNKFTGSVAYLAELPLTDLNIQENFFSGILPQHFQSILNLWIGENKFYVADNSPPWSFPLDAVSVEHNTSSPPTTKANAIKNYSPPRVSEHKKKRIGPGGIACMIGGGTLMATAVALFVATRLNKHGVESLNSKSSESNHGSFHSHPTSATIGISSTALEERESPQIPPFSSASLLGPVGLPSNTEEPSRRSFSKRIRSTGRTKIYTVEELQLATNCFNEANILGEGSLGPVYRAKFPDGKILAVKKINMAGLSFREEEKFLDVICTVSRLKHPHIVALSGYCLEHGKHLLVYDYAGNFTLNDALHNEAYKPLSWVHRLKIALGVAQALDYLHSASCPPVAHGNLKAANVLLDENFTPRVCDCSLAILRPLSINQVEIPANEFIIGEIGYVAPDHGLPGTSSRKRDVFAFGVLLLELLTGRKPFDGARPREEQYLVKWAPPMLPYRASLEQLVDPRMKRTFSSKALSRYADIISLCIQVLTPNCFKLNSLRNCIYSMVAFTQPVRQLRPPMSEVVESLECLYQKFNIEKSDVADGTELDPFERSFHSTNICFMGSPAAVNHASA 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02641 735 Pfam Leucine rich repeat 115 175 IPR001611 GO:0005515
Pumo5g02641 735 Gene3D Transferase(Phosphotransferase) domain 1 468 711 - -
Pumo5g02641 735 MobiDBLite consensus disorder prediction 240 265 - -
Pumo5g02641 735 ProSiteProfiles Protein kinase domain profile. 389 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02641 735 Gene3D Phosphorylase Kinase; domain 1 354 466 - -
Pumo5g02641 735 MobiDBLite consensus disorder prediction 327 367 - -
Pumo5g02641 735 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 354 466 - -
Pumo5g02641 735 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Pumo5g02641 735 MobiDBLite consensus disorder prediction 302 321 - -
Pumo5g02641 735 SUPERFAMILY Protein kinase-like (PK-like) 363 649 IPR011009 -
Pumo5g02641 735 Gene3D Ribonuclease Inhibitor 27 255 IPR032675 -
Pumo5g02641 735 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 20 692 IPR046959 -
Pumo5g02641 735 FunFam Leucine-rich repeat receptor-like protein kinase 467 659 - -
Pumo5g02641 735 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 116 229 - -
Pumo5g02641 735 SUPERFAMILY L domain-like 28 211 - -
Pumo5g02641 735 MobiDBLite consensus disorder prediction 327 342 - -
Pumo5g02641 735 Pfam Protein kinase domain 390 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02641 Pumo-Chr5 72486296 72491648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02641 9 728 Strubbelig Receptor Gene Family AT5G06820 49.137 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Pumo5g02641 Pkinase 1.6e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02641 - - gmx:100775254 1233.01