Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02623 ATGTTACCCTCTCGGTACCCGGGGCATGACTCTAGTGTAACTGTAACAACTTTAGCTATGTTGGTGGGTTCTATGGGAATGGATCAGAGTGCCAAAAGCTTTAATTCCAATCTTCTCAGGCAGAGTAGCTTCCCTGCTGGCCATTTCCCTAACAACATCTCCTTTCAGAACGGGTACGATACTATGAAAGGTGTTGGAAACTATGGTGGGATTAATGGCAGTGATGATGGTGAGCTTAGTCTATCTATGAACAAAATGAAGAATCACATTAGCTTCTCATCAAGGAGTCCTTCTTCATTGGGAATGTTATCACCAACCTCCAAAATGGCCACTGAGGATGGGAGACAGGGAGGTAGCAATGGTGATGCTCGATATTATGGCCCTGGATTCCCTTATGTTTCTTGGAATGAGACTTCACAACCGAAAAGACAGCGAAGTAGTAATGATGAGTTACTTTCTGATTCTCAGAATGGAGAGCTAGGAAATCAACTTCATACACTTTCGCATCATTTGAGTTTGCCAAGAACGTCGTCGGAGATGTTTGCTATGGATAATTTGCTTCAGTTCACGGATTCTGTTCCTTGTAAAATCAGAGCAAAGAGAGGCTTTGCTACTCATCCTCGAAGCATTGCCGAAAGGGTGAGAAGAACTAGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAAACATGGAAAAGCAAACCAGCACAGCAGAGATGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAACAATTCAAGACTCTGAGCGAAAGACGAGCTAAATGCAAATGTATAAACATGCAGAAGACAGAAACAGATCAAGTTGCTTGA 846 0.4243 MLPSRYPGHDSSVTVTTLAMLVGSMGMDQSAKSFNSNLLRQSSFPAGHFPNNISFQNGYDTMKGVGNYGGINGSDDGELSLSMNKMKNHISFSSRSPSSLGMLSPTSKMATEDGRQGGSNGDARYYGPGFPYVSWNETSQPKRQRSSNDELLSDSQNGELGNQLHTLSHHLSLPRTSSEMFAMDNLLQFTDSVPCKIRAKRGFATHPRSIAERVRRTRISERIRKLQELVPNMEKQTSTAEMLDLAVDYIKDLQKQFKTLSERRAKCKCINMQKTETDQVA 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02623 281 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 206 270 IPR036638 GO:0046983
Pumo5g02623 281 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 203 253 IPR011598 GO:0046983
Pumo5g02623 281 FunFam Transcription factor bHLH130 family 204 274 - -
Pumo5g02623 281 Coils Coil 216 236 - -
Pumo5g02623 281 SMART finulus 209 259 IPR011598 GO:0046983
Pumo5g02623 281 Pfam Helix-loop-helix DNA-binding domain 209 254 IPR011598 GO:0046983
Pumo5g02623 281 CDD bHLH_AtbHLH_like 208 261 IPR045239 -
Pumo5g02623 281 MobiDBLite consensus disorder prediction 91 114 - -
Pumo5g02623 281 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 38 275 - -
Pumo5g02623 281 Gene3D - 205 278 IPR036638 GO:0046983
Pumo5g02623 281 MobiDBLite consensus disorder prediction 91 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02623 Pumo-Chr5 72245587 72249297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02623 2 259 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 49.818 8.30e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo5g02623 HLH 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02623 - - gmx:100814652 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02623 5 72245587 72249297 Pumo5g02623 5 72245587 72249297 ECH
Pumo5g02623 5 72245587 72249297 Pumo3g00033 3 531316 534282 ECH
Pumo5g02623 5 72245587 72249297 Pumo3g02861 3 49816420 49820709 PCT