Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02620 ATGGAGCTAGCTCCGGGAGGATTGCGCGGATCCGTGCACGACGGCGCCACACTCGAGTCAATTCAATTCAACGAAGAAATTCAGGGAATCATGGCGTCGGCGCCGGAAAACGCGAGCTCGTTCACCGCGCTGCTTGAACTCCCGCCGACGCAGGTGGTGGAGCTCCTTCACTCGCCGGAATCCGACGCCGCTCGGAAACCGCCTAATTGCCACGTCAGCGCGAATCAGAAGCCCTACCTGCTCAACTCTTTCGGTAGCAATTTGACCTTCCCGTCCAACGCCGCCTTAATCGAACGCGCCGCGAAGTTCTCCGTGTTCGCCGGCGAGACTTCGCCGCCGCCGGGGGAGGCGCGTCTGGTTCCGGCCGGGTCCGGTTCGAATTTGGATAGGGTGAAGAACGAGCCGCAAGAGACCGATTCGAACCCGTGCTCGAGCTCGAGGGTCGGTTGCATTTCGGATCCCGCGGTTGAGAACAACAATCAGAGGACCGCGAAGAGAAAGGAGCGAGAGAAGAAGGTTAAAGGATCGTCTAAGAAGAGTAAGAGCGTCGCCGATGATACCTCCGGTGACGGCGAGAAGCTTCCCTACGTGCATGTTCGAGTTCGTCGAGGTCAAGCCACTGATAGCCACAGCTTGGCAGAAAGGGCTAGGAGAGAGAAGATCAATGCTCGCATGAAGCTTTTACAAGAGCTGGTCCCAGGCTGCGACAAGATATCAGGAACGGCAATGGTTCTGGATGAAATCATCAACCATGTGCAATCTCTACAGCGTCAAGTGGAGATCTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATTGATTTCAGCCTCGACAGTTTATTGGCTACTGATGGGGCATCTCTAATGGATAGTAGTAACTTACCTAGCATGGTGACACCTCTCATGTGGCCAGAAATCCCACTCGATGACAACCGGCAGCATTATCAACAGCAGTGGCAATTGGATGCATTCCACCAACCGCTATGGGAGAGGGAAGAAGTCAACCATAATTTCATGACTCCGGAAAACTCACTTTTGAGTTATGACTCGTCGGCAAACTCAGCGTCTCTGCACTCAAATCAATTGAAGATGGAGCTCTGA 1101 0.5368 MELAPGGLRGSVHDGATLESIQFNEEIQGIMASAPENASSFTALLELPPTQVVELLHSPESDAARKPPNCHVSANQKPYLLNSFGSNLTFPSNAALIERAAKFSVFAGETSPPPGEARLVPAGSGSNLDRVKNEPQETDSNPCSSSRVGCISDPAVENNNQRTAKRKEREKKVKGSSKKSKSVADDTSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTAMVLDEIINHVQSLQRQVEILSMKLAAVNPRIDFSLDSLLATDGASLMDSSNLPSMVTPLMWPEIPLDDNRQHYQQQWQLDAFHQPLWEREEVNHNFMTPENSLLSYDSSANSASLHSNQLKMEL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02620 366 MobiDBLite consensus disorder prediction 137 159 - -
Pumo5g02620 366 MobiDBLite consensus disorder prediction 108 196 - -
Pumo5g02620 366 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 103 350 IPR024097 GO:0006355
Pumo5g02620 366 Gene3D - 202 274 IPR036638 GO:0046983
Pumo5g02620 366 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 205 255 IPR011598 GO:0046983
Pumo5g02620 366 FunFam transcription factor bHLH48-like isoform X1 202 274 - -
Pumo5g02620 366 Pfam Helix-loop-helix DNA-binding domain 209 256 IPR011598 GO:0046983
Pumo5g02620 366 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 203 274 IPR036638 GO:0046983
Pumo5g02620 366 CDD bHLH_AtBPE_like 195 280 - -
Pumo5g02620 366 MobiDBLite consensus disorder prediction 175 196 - -
Pumo5g02620 366 Coils Coil 245 265 - -
Pumo5g02620 366 SMART finulus 211 261 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02620 Pumo-Chr5 72151173 72160308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02620 6 366 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 52.972 2.16e-105 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo5g02620 HLH 2.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02620 - - gmx:100795486 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02620 5 72151173 72160308 Pumo5g02620 5 72151173 72160308 ECH