Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02616 ATGGCTACTACTACATTCTGTACATACCTATTCCTTCTTCTCTCTGTGTCCCTTTCAATCTTCAATCTTAGCTCATCTTCTTCAGAGGGGGATATTCTTCTCTCCTTCAAGGCCTCCATTGAAGACTCTAAGAGGGCCTTGTCTAGCTGGTCCAACACTTCATCAAACCACCACTGTAACTGGACTGGAATCACTTGCTCCACCACACCTTCACTCTCAGTAACTTCTATTAACCTTCAGAGCTTAAACCTTTCTGGGGATATCTTATCTTCCATATGTGACCTTCCAAATCTGTCTTATCTCAACCTTGCTGACAACATCTTCAACCAGCCCATCCCTCTTCATCTCTCTCAGTGCAGTTCCTTGGAGACTTTGAATCTCAGTACCAACCTCATATGGGGCACTATCCCTTCTCAGATTTCTCAGTTTGCTTCCTTGAGGGTGCTTGATTTGAGCAGAAACCACATAGAGGGAAACATCCCTGAAAGCATAGGCTCCTTGAAGAACCTCCAAGTCCTCAACATGGGAAGCAACTTGCTTTCAGGTAGTGTACCTGCTGTCTTTGGCAATCTAACTAAACTTGAAGTCCTTGATTTGTCTCAGAATTCATACTTGGTGAGTGAGATTCCTGAGGACATTGGTGAGCTTGGAAATCTAAAGCAGCTTCTGTTGCAAAGCTCTTCTTTTCAAGGTGGAATTCCAGATTCTCTGGTGGGCCTGGTCAGTTTGACCCATTTGGATCTCTCTGAGAACAACCTAACAGGTGGGGTTCCTCAGGCTCTACCATCTTCTCTCAAGAACCTGGTTTCATTAGATGTTTCACAAAACAAGCTTTTGGGGCCATTTCCAAGTGGCATCTGCAAAGGGCAAGGACTTATAAATCTCGGCCTCCACACAAATGCCTTCACTGGTTCAATACCCAACTCCATTGGTGAATGTAAGAGCCTTGAGAGATTCCAAGTCCAGAACAATGGCTTCTCTGGTGATTTCCCCATTGCATTGTGGTCATTACCCAAAATTAAGCTCATTAGAGCTGAAAACAACAGATTCTCAGGACAGATACCTGAGTCAATTTCAGGAGCTGTTCAGTTGGAGCAGGTTCAGCTTGACAACAACAGCTTTGCTGGCAAAATTCCTAAAGGTCTTGGCTTTGTCAAGAGCTTATACAGATTTTCTGCTTCTCTCAACCGTTTCTATGGTGAACTTCCTCCAAACTTTTGTGACTCTCCTGTTATGAGCATAGTTAATCTCTCCCACAATTCTCTTTCTGGTCAAATCCCAGAGCTAAGAAAATGCAGGAAACTAGTTTCATTGTCTTTGGCCGATAACAGTCTAACTGGAGAAATACCCCCTTCCCTTGCTGAGCTACCTGTGCTTACTTATCTTGATCTTTCAGATAACAATCTCACTGGTTCAATCCCACAAGGGCTTCAAAACTTGAAGCTTGCCCTTTTCAATGTGTCATTCAATCAGCTATCAGGTAAAGTACCATACTCCTTGATTTCAGGTCTCCCTGCCTCATTTTTGGAAGGAAACCCTGGTCTTTGTGGCCCTGGATTGCCTAACTCTTGTTCTGATGACATGCCAAAACACCACATTGGTAGCATTACAACCTTAGCATGTGCCCTCATCTCTCTAGCCTTTGTTGCTGGAACTGCCATTGTTGTTGGTGGGTTTATTTTGTATAGGAGATCTTGCAAAGGGAACCAAGTAGGGGTTTGGCGCTCAGTGTTCTTCTATCCTCTCAGAATCACTGAGCATGATCTTCTTGTAGGGATGAATGAGAAAAGCTCAATGGGAAACGGTGGGGTTTTTGGTAAGGTTTATGTTGTGAGTTTACCTAGTGATGAACTAGTAGCTGTGAAGAAGATGGTTAATTTTGGAAACCAGTCCTCAAAAAGTTTGAAAGCTGAGGTCAAGACTTTGGCAAAAATTAGGCATAAGAATGTTGTTAAAATTCTGGGGTTCTGCCACTCTGATGAGTCAGTTTTTCTCATTTATGAGTACTTGCATGGAGGGAGCTTAGGGGATTTGATTTCTCGTCCGAATTTTCAGTTGCAGTGGGTCATTCGATTAAAAATTGCCATTGGAGTTGCTCAAGGACTGGCATATCTTCACAAGGATTATGTCCCTCACTTGCTTCACAGAAATGTCAAGTCAAGTAACATTTTGTTGGATGCAAACTTTGAGCCAAAACTCACAGATTTTGCTCTTGATCGAGTTGTGGGAGAAGCTGCATTTCAATCAGTTTTGAACTCTGAAGCAGCATCTTCATGTTACATTGCACCAGAAAATGGTTACAGCAAGAAAGCAACTGAACAATTGGACATCTACAGCTTTGGTGTGGTATTGCTGGAGCTAGTGAGTGGCAGGCAAGCAGAGCAAAGAGAGTCAAGTGACTCACTTGACATTGTGAAGTGGGTTAGAAGGAAAGTGAATATCACTAATGGGGTGCAACAAGTTCTTGACCCTAAAATATCACACACTTGTCACCAAGAAATGATTGGAGCTTTAGACATTGCACTTCGTTGCACTTCTGTGGTGCCTGAGAAAAGGCCATCCATGGTAGAAGTTGTTAGAGGCCTTCAGTCCCTTGAGTCAAGAACTTGCATTGCAAATTTGCATGAACCAAATGAGGAACCCTCCTCCATTCCGGTCTGA 2661 0.4322 MATTTFCTYLFLLLSVSLSIFNLSSSSSEGDILLSFKASIEDSKRALSSWSNTSSNHHCNWTGITCSTTPSLSVTSINLQSLNLSGDILSSICDLPNLSYLNLADNIFNQPIPLHLSQCSSLETLNLSTNLIWGTIPSQISQFASLRVLDLSRNHIEGNIPESIGSLKNLQVLNMGSNLLSGSVPAVFGNLTKLEVLDLSQNSYLVSEIPEDIGELGNLKQLLLQSSSFQGGIPDSLVGLVSLTHLDLSENNLTGGVPQALPSSLKNLVSLDVSQNKLLGPFPSGICKGQGLINLGLHTNAFTGSIPNSIGECKSLERFQVQNNGFSGDFPIALWSLPKIKLIRAENNRFSGQIPESISGAVQLEQVQLDNNSFAGKIPKGLGFVKSLYRFSASLNRFYGELPPNFCDSPVMSIVNLSHNSLSGQIPELRKCRKLVSLSLADNSLTGEIPPSLAELPVLTYLDLSDNNLTGSIPQGLQNLKLALFNVSFNQLSGKVPYSLISGLPASFLEGNPGLCGPGLPNSCSDDMPKHHIGSITTLACALISLAFVAGTAIVVGGFILYRRSCKGNQVGVWRSVFFYPLRITEHDLLVGMNEKSSMGNGGVFGKVYVVSLPSDELVAVKKMVNFGNQSSKSLKAEVKTLAKIRHKNVVKILGFCHSDESVFLIYEYLHGGSLGDLISRPNFQLQWVIRLKIAIGVAQGLAYLHKDYVPHLLHRNVKSSNILLDANFEPKLTDFALDRVVGEAAFQSVLNSEAASSCYIAPENGYSKKATEQLDIYSFGVVLLELVSGRQAEQRESSDSLDIVKWVRRKVNITNGVQQVLDPKISHTCHQEMIGALDIALRCTSVVPEKRPSMVEVVRGLQSLESRTCIANLHEPNEEPSSIPV 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02616 886 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 263 527 - -
Pumo5g02616 886 SUPERFAMILY L domain-like 206 520 - -
Pumo5g02616 886 Gene3D Ribonuclease Inhibitor 28 142 IPR032675 -
Pumo5g02616 886 CDD STKc_IRAK 599 865 - -
Pumo5g02616 886 Pfam Leucine rich repeat 433 492 IPR001611 GO:0005515
Pumo5g02616 886 Pfam Leucine rich repeat 218 278 IPR001611 GO:0005515
Pumo5g02616 886 Pfam Leucine rich repeat 145 202 IPR001611 GO:0005515
Pumo5g02616 886 Gene3D Ribonuclease Inhibitor 263 527 IPR032675 -
Pumo5g02616 886 SMART LRR_typ_2 143 166 IPR003591 -
Pumo5g02616 886 SMART LRR_typ_2 167 190 IPR003591 -
Pumo5g02616 886 SMART LRR_typ_2 95 119 IPR003591 -
Pumo5g02616 886 SMART LRR_typ_2 191 216 IPR003591 -
Pumo5g02616 886 SMART LRR_typ_2 265 289 IPR003591 -
Pumo5g02616 886 SMART LRR_typ_2 456 479 IPR003591 -
Pumo5g02616 886 SMART LRR_typ_2 240 263 IPR003591 -
Pumo5g02616 886 FunFam Leucine-rich repeat family protein 28 185 - -
Pumo5g02616 886 PRINTS Leucine-rich repeat signature 265 278 - -
Pumo5g02616 886 PRINTS Leucine-rich repeat signature 243 256 - -
Pumo5g02616 886 SUPERFAMILY Protein kinase-like (PK-like) 602 861 IPR011009 -
Pumo5g02616 886 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Pumo5g02616 886 Gene3D Ribonuclease Inhibitor 143 262 IPR032675 -
Pumo5g02616 886 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 11 864 - -
Pumo5g02616 886 Pfam Protein kinase domain 595 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02616 886 Gene3D Phosphorylase Kinase; domain 1 588 669 - -
Pumo5g02616 886 Gene3D Transferase(Phosphotransferase) domain 1 670 879 - -
Pumo5g02616 886 SUPERFAMILY L domain-like 27 297 - -
Pumo5g02616 886 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 670 870 - -
Pumo5g02616 886 ProSiteProfiles Leucine-rich repeat profile. 78 99 IPR001611 GO:0005515
Pumo5g02616 886 FunFam - 588 669 - -
Pumo5g02616 886 ProSiteProfiles Protein kinase domain profile. 594 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02616 886 ProSiteProfiles Leucine-rich repeat profile. 145 167 IPR001611 GO:0005515
Pumo5g02616 886 ProSiteProfiles Leucine-rich repeat profile. 458 481 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02616 Pumo-Chr5 71646430 71650008 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02616 33 865 Receptor kinase-like Gene Family AT5G06940 66.110 0.0 1097
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo5g02616 Pkinase 2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02616 - - gmx:100794428 1608.19