Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02614 ATGGCGCAGAAGAAGAGAGCTAGGGTTTCCGACGACGAGGAAATGGAAGTGCAACATGATCAAACCAGCCTCTACCAGGTTCTTGGCGTGGAGAGAACGGCGTCTCAGCAGGAAATAAAGAAGGCCTACTACAAGTTGGCGTTGCGGCTTCATCCTGATAAGAACCCTGGTGATGAGGAGGCTAAAGAGAAATTTCAGCAACTGCAAAAGGTTATCTCAATTCTCGGGGATGAAGAGAAGCGGGCACTCTATGATCACACTGGCTGTGTTGATGATGCTGACCTTGCTGGAGATGTTGTTCAGAATCTTCAAGAGTTCTTCAGAGCAATGTACAAGAAGGTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAATTACAGGGGATCTGAATCAGAGAAAAACGATTTGATTGATTTGTACAAGAAGTGCAAGGGTAACATGAATAGGCTTTTTTGTTCAATGCTTTGTTCAGATCCTAAACTTGATTCACACCGATTCAAGGATATTCTCGACGGGGCTATAGCTTCTGGAGAACTAAAGGCAACAAAAGCCTACCAGAAATGGGCTAAGGAAGTATCTGAAACCAAACCGCCCACAAATCCTTTGAGGAGGGAAAAGTCAAATAAGCAGTCAGAGACAGATCTATGTGCAATCATAGCACAACGCCGAAATGAGAGGAAAGGTCAGTTTGATTCCATGTTCTCATCTCTAGTTTCAAAATATGGTGGAGGTGATATGCCAGAACCCTCTGAAGAGGAGTTTGAAGCTACACGGAGAAAGCTGGAGGCTGGTAGATCCTTTAAAAACTCGAAGCAATCAAAGCGGAAGTAA 831 0.4416 MAQKKRARVSDDEEMEVQHDQTSLYQVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDHTGCVDDADLAGDVVQNLQEFFRAMYKKVTEADIEEFEANYRGSESEKNDLIDLYKKCKGNMNRLFCSMLCSDPKLDSHRFKDILDGAIASGELKATKAYQKWAKEVSETKPPTNPLRREKSNKQSETDLCAIIAQRRNERKGQFDSMFSSLVSKYGGGDMPEPSEEEFEATRRKLEAGRSFKNSKQSKRK 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02614 276 ProSiteProfiles dnaJ domain profile. 23 88 IPR001623 -
Pumo5g02614 276 Coils Coil 112 139 - -
Pumo5g02614 276 Gene3D DnaJ domain 5 97 IPR036869 -
Pumo5g02614 276 MobiDBLite consensus disorder prediction 197 211 - -
Pumo5g02614 276 SMART dnaj_3 22 80 IPR001623 -
Pumo5g02614 276 Pfam DnaJ domain 24 85 IPR001623 -
Pumo5g02614 276 CDD DnaJ 25 77 IPR001623 -
Pumo5g02614 276 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 13 271 IPR042977 -
Pumo5g02614 276 MobiDBLite consensus disorder prediction 251 269 - -
Pumo5g02614 276 PRINTS DnaJ domain signature 43 58 IPR001623 -
Pumo5g02614 276 PRINTS DnaJ domain signature 60 80 IPR001623 -
Pumo5g02614 276 PRINTS DnaJ domain signature 80 99 IPR001623 -
Pumo5g02614 276 PRINTS DnaJ domain signature 25 43 IPR001623 -
Pumo5g02614 276 SUPERFAMILY Chaperone J-domain 19 96 IPR036869 -
Pumo5g02614 276 MobiDBLite consensus disorder prediction 238 276 - -
Pumo5g02614 276 MobiDBLite consensus disorder prediction 190 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02614 Pumo-Chr5 71605532 71608496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02614 25 85 C2H2 Transcription Factor Family AT1G74250 39.394 4.68e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02614 K09529 - gmx:100793909 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02614 5 71605532 71608496 Pumo5g02614 5 71605532 71608496 ECH
Pumo5g02614 5 71605532 71608496 Pumo3g02843 3 49369686 49378284 PCT