Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02613 ATGGAGACAGAGAACGGTGACACCAGGTCCAAAAAGATGGAAGAGTATGAAGTCATAGAGCAAATTGGAAGAGGAGCTTTTGGCTCTGCCTTCCTCGTTCTTCACAAGTCCGAAAAAAAGAGGTATGTGCTGAAAAAGATTCGGTTGGCCAAGCAGACAGAGAAGTTCAAACGTACAGCACATCAAGAGATGAACCTGATTGCAAAACTAAATAACCCATATATTGTGGAGTACAAAGACGCTTGGGTGGAGAAGGAGGACCACATATGCATTATAACTGGCTATTGTGAAGGAGGTGACATGGCAGAGAACATAAAGAAAGCTCGAGGGTCATTTTTTCCTGAGGAGAAGGTCTGCAAATGGCTGACTCAGTTGTTGATAGCTGTGGACTACTTGCACTCTAATCGTGTAATACACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGACAACAACATTCGGCTTGGTGACTTTGGTCTTGCAAAGCGACTTAATGCAGAAGACCTTGCTTCCTCGGTTGTTGGAACTCCAAATTACATGTGTCCTGAGCTCCTCGCTGATATACCTTATGGTTATAAATCTGATATGTGGTCTCTTGGTTGCTGCATGTTTGAGATTGCTGCACATCAACCAGCATTTCGTGCTCCAGACATGGCTGGACTTATCAATAAAATAAACAGATCCATCATTTCTCCACTGCCAATTGTTTATTCTTCCACACTGAAACAACTTATCAAGAGCTTGCTTAGGAAAAACCCAGAACATAGGCCAACCGCAGCTGAATTGTTAAGGCATCCGCTTCTACAACCTTATGTTCTTCGCTGTCATAATGCAACATCTAATTTTCTTCCAGTATATCCCCTAGTTAATTCAAAGGATAAAACAAGAAGATCTAATAAATCTAGTGGTGGCAAGGACCATAAGGACAAAGAAGCAAGCGTAGTAAATAGTTTGGAACGGATTCATCCGATTGAGGGAAATGGAGATATACATATAAACAATCTTCCTAATGATGCAGTAACAATCTCAACCAGTGCAGAAGACAATCTTGAGACCAGGATGGTTGATCTTACCAGCTACATAGTGGAATCTTCTACTAGTATTAGTGGCTCAAAAGATGGGTCAACAACATCTGAATCAACTATTTGCAGTGTGTGCAAGGAGGACTTTAAAAGTAGACCTGCAAGGGAAACGGCTAACAATGAGATCTCTTCAAAGTGCACACAAGATTCTCGGCATGAAGAACAAGGATTTGCTGCTAAACATTTTAAAAAATTAGGAGATGACATAAATGCAGTGACCACAGAAGTTGAAGATGCTTCTTGCAATGAAGGTTTGGATAATGCTGAAGCACAGAGGGAAGATGCAAACCTTGAGGACTCTGGTAAATCAACAATGTCCAGTGCAGGCAGTAGCAGCACTGATAAAGATAAGTCCATCAACGAGGAAAGGTCATCACTAATTGTGCATCAACATGACACTGAATCTGGAAACTGCTTGAAGAAAAGTGAAAACTTTGATGTATTTACAGAAGACTCACATATGAACTGCTTGACATCTGATAGTAATGGTGCACTTCCAGTTAAGGATGATGACACAGCTAACAAACACATTCTTTGCTCCACGCATAAAGATGATAATGCAGTTGAGGTTGATCAGACACTGAGTGGCGTTTCATTGAGTGTAATAACTGATGTAGGCGATGACGAAACAATCAAGACTGTGTTAGATAGTCCCTGCCAGCAAAGAGCTGATGCTCTGGAATCTCTGCTTGAATTATGTGCTCAGCTACTCAAGCAAGATAAACTTGAAGAGCTTGCTGGGGTTCTAAGACCATTTGGGAAAGAAGCTGTCTCATCAAGAGAAACAGCAATATGGCTAGCAAAAAGCCTCAAATCTGCCCAAAAGTTTAATCCTGAAACCTAA 1932 0.4115 METENGDTRSKKMEEYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKEDHICIITGYCEGGDMAENIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNAEDLASSVVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSIISPLPIVYSSTLKQLIKSLLRKNPEHRPTAAELLRHPLLQPYVLRCHNATSNFLPVYPLVNSKDKTRRSNKSSGGKDHKDKEASVVNSLERIHPIEGNGDIHINNLPNDAVTISTSAEDNLETRMVDLTSYIVESSTSISGSKDGSTTSESTICSVCKEDFKSRPARETANNEISSKCTQDSRHEEQGFAAKHFKKLGDDINAVTTEVEDASCNEGLDNAEAQREDANLEDSGKSTMSSAGSSSTDKDKSINEERSSLIVHQHDTESGNCLKKSENFDVFTEDSHMNCLTSDSNGALPVKDDDTANKHILCSTHKDDNAVEVDQTLSGVSLSVITDVGDDETIKTVLDSPCQQRADALESLLELCAQLLKQDKLEELAGVLRPFGKEAVSSRETAIWLAKSLKSAQKFNPET 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02613 643 MobiDBLite consensus disorder prediction 395 414 - -
Pumo5g02613 643 SMART serkin_6 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02613 643 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Pumo5g02613 643 CDD STKc_Nek 16 270 - -
Pumo5g02613 643 Pfam Protein kinase domain 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02613 643 FunFam serine/threonine-protein kinase Nek6 isoform X2 96 284 - -
Pumo5g02613 643 SUPERFAMILY Protein kinase-like (PK-like) 13 301 IPR011009 -
Pumo5g02613 643 MobiDBLite consensus disorder prediction 463 477 - -
Pumo5g02613 643 ProSiteProfiles Protein kinase domain profile. 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02613 643 MobiDBLite consensus disorder prediction 452 482 - -
Pumo5g02613 643 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Pumo5g02613 643 FunFam Serine/threonine-protein kinase Nek6 1 95 - -
Pumo5g02613 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Pumo5g02613 643 MobiDBLite consensus disorder prediction 295 316 - -
Pumo5g02613 643 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 13 594 - -
Pumo5g02613 643 Gene3D Transferase(Phosphotransferase) domain 1 98 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02613 Pumo-Chr5 71596273 71602496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02613 9 271 MAP Kinase Kinase Kinase AT3G13530 32.453 2.72e-37 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Pumo5g02613 Pkinase 5.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02613 K08857 - gmx:100793379 1137.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02613 5 71596273 71602496 Pumo5g02613 5 71596273 71602496 ECH