Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02610 ATGGCTGACCCCTACTCCAATTTTTTCTCATCCTCACCCTTCTTCCGTTTCAACCACAACCATTTCCCTTCTTCAAACCCTTCTCCACACACTCCCTATGTCCACCACAACTTCATCAACCACAACAAAACCAACGACACCACCACCTTTTTCCACTACCACCACCACCACCAGCAGAATACTGCTACTACTTTTTCTTCTTTGCCACCTTCCCCTCCTTTGAGAGAAGAACTACCCCTCTTGAGGATGAGTCCAACAAAGCAAGAGGAGGAGGAAGAGGAGGACCTGTCTTGCACTGGAGCTGCCATGGATGTGGAGGAGAGGATCCACAATATCCACGCCAAAGAGGAAGAAGATGATGAAGATGGCACTGTCACTGTTGCACTCCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATGGCTTCTGTCCTCTCTTCTTCCTCAGAGATCACTGACAAAGATCACGGAGATGGTGCTGCTGAGGATTCTTATGCTGGCTTCAGACTCAACAAGGGCCAGTACTGGATCCCTACCCCTTCTCAGATTCTCATTGGTCCTACTCAGTTCTCTTGCCCTGTTTGCTGCAAAACTTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGACCTGAATCTCTGAGGGGAACCCAACCAACAGGAATGCTGAGGCTTCCTTGCTATTGTTGTGCCCCAGGGTGCAGAAACAACATTGACCATCCAAGAGCAAAGCCTCTCAAAGACTTTAGAACACTCCAAACGCATTACAAGAGGAAGCATGGGATCAAGCCCTTCATGTGCAGGAAATGTGGCAAGGCTTTTGCTGTGAGGGGAGATTGGAGAACTCATGAGAAGAACTGTGGCAAGCTTTGGTACTGTATCTGTGGCTCCGATTTCAAGCACAAGAGGTCCCTTAAAGACCACATTAAAGCCTTTGGGAGTGGCCATGCAGCTTATGGGATTGATGGATTCGAAGAAGAAGATGAGCCAGCATCCGAAGTAGAGCAAGATAATGATGATTCCACCCAGTGA 1059 0.4835 MADPYSNFFSSSPFFRFNHNHFPSSNPSPHTPYVHHNFINHNKTNDTTTFFHYHHHHQQNTATTFSSLPPSPPLREELPLLRMSPTKQEEEEEEDLSCTGAAMDVEERIHNIHAKEEEDDEDGTVTVALHIGLPSPSAAEMASVLSSSSEITDKDHGDGAAEDSYAGFRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDDSTQ 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02610 352 ProSitePatterns Zinc finger C2H2 type domain signature. 192 212 IPR013087 -
Pumo5g02610 352 Gene3D Classic Zinc Finger 252 327 - -
Pumo5g02610 352 SMART c2h2final6 190 212 IPR013087 -
Pumo5g02610 352 SMART c2h2final6 274 294 IPR013087 -
Pumo5g02610 352 SUPERFAMILY beta-beta-alpha zinc fingers 256 294 IPR036236 -
Pumo5g02610 352 Gene3D Classic Zinc Finger 189 212 - -
Pumo5g02610 352 PANTHER ZINC FINGER PROTEIN WIP2 43 348 IPR043584 GO:0003700|GO:0010468
Pumo5g02610 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 274 294 IPR013087 -
Pumo5g02610 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 190 217 IPR013087 -
Pumo5g02610 352 FunFam Zinc finger protein WIP2 243 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02610 Pumo-Chr5 71559922 71562835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02610 1 349 C2H2 Transcription Factor Family AT3G57670 62.338 2.23e-146 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo5g02610 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02610 - - gmx:100802907 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02610 5 71559922 71562835 Pumo5g02610 5 71559922 71562835 ECH
Pumo5g02610 5 71559922 71562835 Pumo4g04036 4 81052716 81055032 ECH
Pumo5g02610 5 71559922 71562835 Pumo3g02835 3 49147449 49149997 PCT