Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02602 ATGGCAACGGGAACGGGAACGGGGAGTAAGAAGAAGGCATCACCTCTCTCTTTGCAGCAATTCATATCCATTACCGCTCCTCTTCTTGACTTGGAAAAGGAAGCTGAGATTTCAAGCTCAATCGCCACTGGCGCCTCCAGGAATTTAGATTCTGCTCAAAAGAGGGGTTCCACAATCCTCAACTTGAAGTGCGTCGATGTCCAGACAGGGCTTATGGGGAAGTCTCTGATCGAGTTCCAGTCTACAAAAGGAGATGTTCTTCCTGCACACAAGTTTAGTACTCATGACGTTGTTGTTTTAAAACTCAACAAGTCTGATTTAGGTTCTCCTGCTCTTGGACAAGGTGTTGTTTACAGATTGAAGGATTCATCAATAACTGTTGCTTTTGATGATATACCAGAAGATGGTTTAAACAGTCCCCTAAGGCTGGAAAAAGTAGCAAATGAGGTGACATATCGCAGGATGAAAGATGCGTTGATACAGTTGAGTAAAGGAGTGCACAAGGGTCCTGCCTCTGATCTGATTCCTGTCTTGTTTGGGGAGAGGCCACCAACAGTGTCAAAGAAGGATGTATCCTTCACTCCCATTAATATCAATCTTGACCACTCTCAGAAAGAAGCAGTTTCAAAAGCTCTATCATCGAAGAATGTGTTCTTGCTGCATGGACCACCTGGAACAGGAAAAACTACGACAGTTGTAGAAATTATATTACAAGAAGTGAAACGTGGATCTAAGATTCTTGCTTGTGCTGCCTCAAATATTGCTGTCGACAACATTGTTGAGCGGCTAGTTCCACATAGAGTTAAGCTGGTGAGACTGGGTCATCCTGCACGTTTATTGCCTCAAGTACTGGACAGTGCGCTGGATGCTCAGGTACTACGAGGAGATAATAGTGGTCTTGCAAATGACATTCGGAAAGAAATGAAGGCATTGAATGGAAAGCTGCTGAAAACCAAAGACAGAAATACAAGAAAGGACATACAAAGGGAACTTAGGACTCTATCCAAAGAAGAACGTAAAAGGCAGCAGCTTGCTGTAACAGATGTACTTAAAGGTGCAGATGTAATATTAACTACTTTGATTGGGGCTTTCTCTAAGAAACTAGACAGCACTTCATTTGATTTGGTGATTATTGATGAAGCTGCTCAAGCACTTGAGATAGCATGCTGGATACCTCTGCTGAAGGGTTCAAGATGTATACTTGCAGGGGACCATCTTCAACTTCCTCCAACCATTCAAAGTGTTGAAGCCGAGAAGAAAGGCTTAGGAAGAACGCTCTTTGAACGACTTGCAGAAATGTATGGAGATGAAATCACATCAATGCTTACTGTCCAGTACCGTATGCATGAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAGTAAGATCAAGGCTCATCCAAGTGTTACTGCGCATACGTTATATGATCTTGAGGGTGTGAAGCGGACATCTTCAACTGAACCCACCCTTCTTCTCATAGACACAGCTGGATGTGATATGGAAGAAAAGAAAGATGAAGAAGATAGCACCTTTAATGAAGGTGAAGCTATGGTTACAGTGGCTCATGCAAAGAGACTAGTGCAAAGTGGGGTGCTTCCTTCTGATATTGGAATCATTACCCCATATGCTGCCCAGGTTGTTTTACTCAAGATGCTGAAAAACAAGGAGGACCGGCTGAAGGATGTTGAAATCTCAACAGTTGATGGTTTCCAGGGAAGGGAGAAGGAAGCCATTATTATATCAATGGTTCGATCAAATTCAAAAAAAGAGGTTGGCTTTCTGAGTGATCGCCGGCGAATGAATGTGGCTGTGACACGGTCTAGAAGGCAATGTTGTCTTGTCTGTGACACAGAGACAGTCAATGGTGATGGATTTCTAAAGCGATTGATTGAGTATTTTGAGGAGCATGGTGAATATCTGAGTGCATCCGAGTTCCAGAATGAGTAG 1953 0.4301 MATGTGTGSKKKASPLSLQQFISITAPLLDLEKEAEISSSIATGASRNLDSAQKRGSTILNLKCVDVQTGLMGKSLIEFQSTKGDVLPAHKFSTHDVVVLKLNKSDLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHKGPASDLIPVLFGERPPTVSKKDVSFTPININLDHSQKEAVSKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRLGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKALNGKLLKTKDRNTRKDIQRELRTLSKEERKRQQLAVTDVLKGADVILTTLIGAFSKKLDSTSFDLVIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAEMYGDEITSMLTVQYRMHELIMDWSSKELYNSKIKAHPSVTAHTLYDLEGVKRTSSTEPTLLLIDTAGCDMEEKKDEEDSTFNEGEAMVTVAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKEDRLKDVEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRSRRQCCLVCDTETVNGDGFLKRLIEYFEEHGEYLSASEFQNE 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02602 650 Pfam AAA domain 200 414 IPR041677 GO:0004386
Pumo5g02602 650 SMART ultradead3 196 447 IPR014001 -
Pumo5g02602 650 NCBIfam IGHMBP2 family helicase 348 643 IPR004483 GO:0003677|GO:0005524
Pumo5g02602 650 Pfam AAA domain 423 619 IPR041679 -
Pumo5g02602 650 CDD DEXXQc_SMUBP2 199 447 - -
Pumo5g02602 650 Gene3D - 44 146 - -
Pumo5g02602 650 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 10 648 - -
Pumo5g02602 650 SMART AAA_5 214 466 IPR003593 GO:0016887
Pumo5g02602 650 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 637 IPR027417 -
Pumo5g02602 650 Gene3D - 446 650 IPR027417 -
Pumo5g02602 650 FunFam P-loop containing nucleoside triphosphate hydrolase 446 650 - -
Pumo5g02602 650 Coils Coil 301 321 - -
Pumo5g02602 650 Gene3D - 27 430 IPR027417 -
Pumo5g02602 650 FunFam DNA-binding protein SMUBP-2 44 146 - -
Pumo5g02602 650 CDD SF1_C_Upf1 448 636 IPR047187 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02602 Pumo-Chr5 71486572 71493498 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02602 173 383 Core DNA Replication Machinery Family AT1G08840 25.592 1.63e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02602 - K19036 gmx:100810545 1206.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02602 5 71486572 71493498 Pumo5g02602 5 71486572 71493498 ECH