Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02601 ATGGATACTTGCAAGAAGTCTCCCTTGAAGCCATGGAAGAAAGGGCCAACCAGGGGGAAAGGTGGGCCACAGAATGCGTCGTGCGAGTACCGAGGTGTTAGGCAGAGAACATGGGGCAAATGGGTTGCTGAGATAAGAGAGCCAAAGAAGAGAACCAGACTCTGGCTTGGTTCTTTTGCCACAGCTGAAGAAGCTGCCATGGCTTATGATGAGGCTGCAAGGAGACTCTATGGACCAGATGCATACCTTAATCTTCCCCACCTGCAACCTAGGTCCACTTCAACTATCACATCAGGAAAGTTCAAATGGTACCCTTCCAAGAACTTCATTTCAATGTTTCCTTCCTGTGGATTACTCAATGTAAATGCTCAACCTAGTGTTCATTTAATCCATCAGAGGCTACAAGAGCTTAAGCGAAATTCGGTTGTAAGTCAATCCCAGTCTAGTTCATCAAATGATCCAAAGGCAGAAATTCAGAATATAGACAGCAAAAAAGATGGAGAAAATCCTCCAAAAGATGCTCAAACGTCATCAGAGGAGGTGCTTGGAGATCTTCAGGAGAAACCCCAGATAGACCTCCATGAGTTTCTTCAACAGCTGGGAATACTGAAAGAAGAAAGACAGTCAGAAAGAACTGATAGCTCAGGAAGTTCAACAGTGCCTGAAGCTGTGTTGAGAGATGACAATGATCAATTGGGAGTGTTTTCTGACAAGAGTGTTAACTGGGAGGCATTGATTGAGATGCATGGAATTGCAGGTATTCAGGAATCAGAAGCCACCCAGCTTGAAGCATATGACCCAAATGATGACCTTACTTTCTCAACTTCCATTTGGAACTTTTAA 843 0.4425 MDTCKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQPRSTSTITSGKFKWYPSKNFISMFPSCGLLNVNAQPSVHLIHQRLQELKRNSVVSQSQSSSSNDPKAEIQNIDSKKDGENPPKDAQTSSEEVLGDLQEKPQIDLHEFLQQLGILKEERQSERTDSSGSSTVPEAVLRDDNDQLGVFSDKSVNWEALIEMHGIAGIQESEATQLEAYDPNDDLTFSTSIWNF 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02601 280 MobiDBLite consensus disorder prediction 1 27 - -
Pumo5g02601 280 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Pumo5g02601 280 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Pumo5g02601 280 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Pumo5g02601 280 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Pumo5g02601 280 MobiDBLite consensus disorder prediction 140 185 - -
Pumo5g02601 280 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Pumo5g02601 280 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Pumo5g02601 280 MobiDBLite consensus disorder prediction 158 173 - -
Pumo5g02601 280 MobiDBLite consensus disorder prediction 204 225 - -
Pumo5g02601 280 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Pumo5g02601 280 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 244 - -
Pumo5g02601 280 MobiDBLite consensus disorder prediction 140 157 - -
Pumo5g02601 280 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Pumo5g02601 280 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02601 Pumo-Chr5 71483292 71484398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02601 5 280 AP2-EREBP Transcription Factor Family AT3G57600 54.093 2.17e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo5g02601 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02601 - - gmx:100801311 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02601 5 71483292 71484398 Pumo5g02601 5 71483292 71484398 ECH