Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02597 ATGAATAACTTTTCTGCTAATACTGAAGATTCTTTTGCAAGCTTGCTTGAGCTTGCAGCCAATAATGATGTTGAGGGTTTCAAAAGCTTAATTGAGTGTGATCCTTCCTCCATAGATGAGGTTGGGTTGTGGTATGGCCGTTGCAAGGGGTCAAAGCAGATGGTCAACGAGCAAAGAACTCCTTTGATGGTTGCTGCTACCTATGGTGGAATTGATGTTATGAAGCTGATTCTTTCTCTATCCGAAGCTGATGTCAACCGCTCCTGTGGCCTTGACAAAAGCACTGCGCTTCATTGTGCAGCTTCAGGTGGAGCTGAAAACGCGGTCGATGCTGTGAAGCTGCTTCTAGAAGCAGGGTCTGATCTGAATTCTGCGGATGCTAATGGTCACCGACCCGGGGATGTTATTGTTTCTCCTCCCAAGCTTGAACATGTCAAGAACAGTCTTGAAGAGCTTCTTCAAACCGATGGGTGTAATAATAATCTTAGGGTGATCACAACAACCTTATGCAGTGCATATTCTCCACCTCTATCAACCTCACCAGAGATTGAGTCTCCTTCCACCCCAGATTTGAAGATGAAGTCAAATGATGTCACTGAGAAGAAAGAGTATCCTGTTGATCCATCCCTTCCAGACATCAAGAACAGCATATACTCAACCGATGAATTCCGAATGTACTCGTTCAAGGTTCGGCCTTGTTCGCGTGCTTATTCACACGATTGGACTGAGTGCCCTTTTGTTCATCCAGGGGAGAATGCTCGAAGGAGGGACCCCAGAAAGTTCCATTACAGCTGTGTCCCTTGTCCTGATTTTCGAAAGGGTGCTTGCAGGAGAGGAGACATGTGTGAATACGCTCATGGGGTTTTCGAGTGCTGGCTGCATCCTGCACAGTATCGAACCCGGCTCTGCAAGGATGGAACAAATTGTTCAAGAAGAGTCTGTTTCTTTGCACATACAGCTGAAGAGCTTAGACCACTGTATGTTTCAACTGGTTCTGCTGTTCCTTCTCCTCGGTCTAGCACATCCTCTGCTATGGATTTTGTTGCAGCCATGAACATGTTGCCTGGCTCTCCTTCCTCAATCATGTCTCCCTCGCCTTTCACTCCGCCTATGTCGCCTTCTTCTGTTGCTTGGCCCCAGCCAAACATCCCAGCTTTGCACCTTCCTGGAAGTAATCTTAATTCCAGTCGTCTGAGATCTTCATTCAATGCTAGAGATATTCCTATGGATGGCGGTTTTGATTTGTTACCTGATTATGATCAGCAGCAACAGCTCCTGAACGAGTTCTCATGCCTCTCTCCACAGCCTATGAACCGCTCTGGTCGCATGAAACCCCTCAATCCTTCAAACCTTGATGATCTCTTTTCTGCTGAGAGTTCTTCTCCTCGATATGCTGATCCAACATTGGCTTCAGCTGTGTTTTCTCCAACTCACAAATCAGCTGTCCTCAATCAATTTCAGCACCAGCAAAGCTTGTTGGCACCAGTGAATACAAGTTTTTCCTCTAAAAATGTTGAGCATCCTTTATTGCAGGCCTCATTTGGGGTTCAGACATCAGAAAGAATGTCTCAGCGAAATGTGGAACAACCTATTTCTCCAATGGGTTCCAGGATTTCTATGCTAGCTCAACGTGAGAAGCAACAATTTCGCAGCTTAAGCTCCCGGGAACTCGGCTCCAACTCTGCTGTTGCTGCGGCAGCCTCTGCCAATTCTTGGTCAAAATGGGGATCACCCAATGGTAAGTTTGATTGGCCAGTTGGTGCTGATGAAGTAGGTAAGCTAAGAAGGTCATCATCATTTGAGCTTGGAACAATGGTGAGGAGCCTGATTTGTCTTGGGTGCAGTCACTTGTTAAAGAATCACCAACTGAAGTTAAAGATAAATTGGCAACCACTGTCTCAAATGTTGCAGTTGCAGCAGCTGGATCCTCCAGTGAGGGATCAAACATGA 1950 0.4621 MNNFSANTEDSFASLLELAANNDVEGFKSLIECDPSSIDEVGLWYGRCKGSKQMVNEQRTPLMVAATYGGIDVMKLILSLSEADVNRSCGLDKSTALHCAASGGAENAVDAVKLLLEAGSDLNSADANGHRPGDVIVSPPKLEHVKNSLEELLQTDGCNNNLRVITTTLCSAYSPPLSTSPEIESPSTPDLKMKSNDVTEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFVAAMNMLPGSPSSIMSPSPFTPPMSPSSVAWPQPNIPALHLPGSNLNSSRLRSSFNARDIPMDGGFDLLPDYDQQQQLLNEFSCLSPQPMNRSGRMKPLNPSNLDDLFSAESSSPRYADPTLASAVFSPTHKSAVLNQFQHQQSLLAPVNTSFSSKNVEHPLLQASFGVQTSERMSQRNVEQPISPMGSRISMLAQREKQQFRSLSSRELGSNSAVAAAASANSWSKWGSPNGKFDWPVGADEVGKLRRSSSFELGTMVRSLICLGCSHLLKNHQLKLKINWQPLSQMLQLQQLDPPVRDQT 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02597 649 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 267 287 IPR000571 GO:0046872
Pumo5g02597 649 Pfam Ankyrin repeats (3 copies) 18 126 IPR002110 GO:0005515
Pumo5g02597 649 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Pumo5g02597 649 Gene3D - 263 325 - -
Pumo5g02597 649 SMART c3hfinal6 297 320 IPR000571 GO:0046872
Pumo5g02597 649 SMART c3hfinal6 262 288 IPR000571 GO:0046872
Pumo5g02597 649 SMART ANK_2a 10 40 IPR002110 GO:0005515
Pumo5g02597 649 SMART ANK_2a 92 124 IPR002110 GO:0005515
Pumo5g02597 649 SMART ANK_2a 57 87 IPR002110 GO:0005515
Pumo5g02597 649 SUPERFAMILY Ankyrin repeat 4 146 IPR036770 -
Pumo5g02597 649 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Pumo5g02597 649 ProSiteProfiles Zinc finger C3H1-type profile. 267 289 IPR000571 GO:0046872
Pumo5g02597 649 PANTHER UNKEMPT FAMILY MEMBER 17 606 IPR045234 -
Pumo5g02597 649 FunFam Zinc finger CCCH domain-containing protein 66 220 288 - -
Pumo5g02597 649 Gene3D - 8 155 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02597 Pumo-Chr5 71448045 71451002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02597 3 600 C2H2 Transcription Factor Family AT5G12850 54.088 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo5g02597 Ank_2 7.2e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02597 - - ccaj:109796653 993.416