Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02589 ATGACTGTCACACCTAAGATCTCAGTTAACGATGGAAAACTTGTTGTCCATGGCAAGACCATACTGACTGGAGTGCCGGATAACGTTGTGCTGACTCCAGGATCTGGAAGGGGTCTTGTGACTGGTGCTTTCATTGGTGCCACAGCTTCCCACAGCAAAAGTCTCCATGTGTTTCCAATGGGTGTCTTAGAGGGGCTCCGGTTCATGTGTTGTTTCCGGTTCAAGTTATGGTGGATGACTCAGAGAATGGGAACTTGTGGGAGGGATGTTCCTCTGGAGACTCAATTCATGCTTATTGAGAGCAAAGAGAGTGAAGCTGATGGGGAGAATTCTCCAATCATCTACACTGTCTTGCTTCCTCTCCTAGAAGGTCAATTCCGAGCTGTTCTTCAAGGCAATGACAAGAACGAGATAGAGATTTGCCTCGAGAGTGGAGATAATGCGGTTGAGACTGACCAAGGCCTTCACATGGTCTACATGCATGCTGGGACCAACCCCTTTGAAGTCATCAATCAAGCTGTCAATGCTGTGGAAAAACACATGCAAACTTTTCTTCATCGTGAGAAGAAAAGGTTGCCATCTTTTCTTGACTGGTTTGGCTGGTGCACATGGGATGCTTTCTATACTGATGTCACAGCTGAGAGTGTTGAGGAAGGCCTGAAAAGTCTATCACAGGGAGGAACACCTCCAAGATTCCTCATCATAGATGATGGTTGGCAACAGATTGAAAATAAAGCAAAGGATGCTGCTGATTGTGTCGTACAAGAAGGAGCACAGTTTGCTACAAGGTTGACTGGTATTAAAGAGAATACTAAATTTCAAAAGAAATCACAGAACAATGAGCAGATATCAGGTCTGAAGCATCTAGTAGATGGAGCAAAGCAGCATCACAATGTGAAAAATGTATATGTATGGCATGCACTAGCTGGTTATTGGGGTGGAGTAAAGCCAGCAGCAACTGGCATGGAACATTATGACACAGCCTTGGCATATCCAGTGCAGTCACCAGGTGTGCTAGGAAACCAACCAGACATTGTCATGGACAGCCTGGCTGTACATGGCCTTGGCCTAGTGCACCCAAAGAAGGTTTTCAATTTCTACAATGAGCTCCATGCTTACTTAGCTTCATGTGGAGTGGATGGAGTCAAGGTTGATGTGCAGAACATTGTTGAGACCCTTGGTGCTGGACATGGTGGAAGAGTCTCACTTACACGCAGCTACCATCACGCGCTTGAGGCTTCCATTGCTCGTAACTTTGCTGACAATGGATGCATTGCGTGTATGTGTCACAACACTGATGGACTTTATAGTGCCAAGCAGACTGCTGTTGTGAGAGCTTCTGATGATTTTTACCCTCGCGATCCTGCTTCCCACACCATCCATATTTCATCTGTTGCATACAACTCACTTTTCCTTGGAGAATTCATGCAACCTGACTGGGACATGTTTCATAGTTTACACCCGGCAGCAGAATATCATGCTGCAGCTCGTGCAATTGGTGGATGTCCAATTTATGTTAGTGACAAGCCAGGCAATCACAATTTTGATCTTCTTAAGAAGCTGGTTCTCCCTGATGGTTCAGTTCTCCGTGCTCAGTTACCTGGCAGGCCAACTCGTGACTCTCTCTTTGTTGATCCAGCTAGAGATGGGACTAGCTTGCTCAAAATATGGAACCTGAACAAATGCTCTGGAGTTGTTGGTGTTTTTAACTGCCAAGGTGCTGGGTGGTGCAAGGTAGAGAAGAAAACCCGCATCCATGATACATCTCCTGGTACACTCACTGGCTCTGTCTGTGCCTCTGATGTTGACCTCATCACACAAGTAGCAGGTGCTGAATGGCTTGGAGAGACAATTGTTTATGCTTACAGATCAGGTGAGGTGATTCGGCTACCAAAAGGAGTTTCAGTTCCAGTGACACTAAAAGTTGTGGAGTTTGAGCTTTTCCACTTCTGTCCAATCCAAGAAATTGCACCAAGTATTTCATTTGCAGCAATAGGGCTACTGGATATGTTCAACACTGGAGGAGCAGTGGAGCAGGTTGAAATTCATAGAGCCTCTAACAACAAACCAGAACTGTTTGATGGTGAGGTGTTATCAGAACTGACCTCTTCTCTCAGTCCTAACCGAGCAGCAACAGCAAGTATTGCTCTGAGAGTCAGGGGAAGGGGCAGATTTGGAGTTTACTCCTCCCAGAGACCACTGAAGTGTGCGGTAGATGGCACTGAAACCGACTTCAACTATGACTCAGAGACCGGGTTGACAACCTTCTCCATCCCAGTTCCTCCAGAAGAGATGTACAGATGGTCAATAGAGATCCAAGTTTGA 2325 0.4606 MTVTPKISVNDGKLVVHGKTILTGVPDNVVLTPGSGRGLVTGAFIGATASHSKSLHVFPMGVLEGLRFMCCFRFKLWWMTQRMGTCGRDVPLETQFMLIESKESEADGENSPIIYTVLLPLLEGQFRAVLQGNDKNEIEICLESGDNAVETDQGLHMVYMHAGTNPFEVINQAVNAVEKHMQTFLHREKKRLPSFLDWFGWCTWDAFYTDVTAESVEEGLKSLSQGGTPPRFLIIDDGWQQIENKAKDAADCVVQEGAQFATRLTGIKENTKFQKKSQNNEQISGLKHLVDGAKQHHNVKNVYVWHALAGYWGGVKPAATGMEHYDTALAYPVQSPGVLGNQPDIVMDSLAVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQNIVETLGAGHGGRVSLTRSYHHALEASIARNFADNGCIACMCHNTDGLYSAKQTAVVRASDDFYPRDPASHTIHISSVAYNSLFLGEFMQPDWDMFHSLHPAAEYHAAARAIGGCPIYVSDKPGNHNFDLLKKLVLPDGSVLRAQLPGRPTRDSLFVDPARDGTSLLKIWNLNKCSGVVGVFNCQGAGWCKVEKKTRIHDTSPGTLTGSVCASDVDLITQVAGAEWLGETIVYAYRSGEVIRLPKGVSVPVTLKVVEFELFHFCPIQEIAPSISFAAIGLLDMFNTGGAVEQVEIHRASNNKPELFDGEVLSELTSSLSPNRAATASIALRVRGRGRFGVYSSQRPLKCAVDGTETDFNYDSETGLTTFSIPVPPEEMYRWSIEIQV 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02589 774 SUPERFAMILY (Trans)glycosidases 195 526 IPR017853 -
Pumo5g02589 774 PANTHER - 1 772 IPR008811 -
Pumo5g02589 774 Pfam Raffinose synthase or seed imbibition protein Sip1 7 757 IPR008811 -
Pumo5g02589 774 Gene3D Aldolase class I 198 521 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02589 Pumo-Chr5 71335288 71341259 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02589 1 557 Glycoside Hydrolase AT3G57520 82.616 0.0 991
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02589 K06617 - gmx:100807861 1477.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02589 5 71335288 71341259 Pumo5g02589 5 71335288 71341259 ECH
Pumo5g02589 5 71335288 71341259 Pumo3g02804 3 47717056 47723266 PCT