Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02585 ATGGGGACTCCTGAATTTCCCGATCTCGGCAAGCATTGCTCTGTTTCCGATTGCAAGCAGCTTGATTTCTTGCCCTTCACATGCGATCGCTGTAATCAGGTATATTGTTTGGAGCACCGAGGTTATATCAAACATAAGTGCACAAAGGCCAACAAACAAGATGTCACAGTTGTCATATGTCCTCTTTGTGCCAAAGGAGTTCGCCTCATTCCAGATCAAGACCCAAACATAACTTGGGACAATCATGTTAACGTTGATTGTGACCCATCAAATTACGAGAAAGTCACAAAGAAGAGAAAATGCCCTGCCCCCGGATGCAAAGAGGTCTTGGTATTCTCCAACACAATCAAGTGCAGGGACTGCTTGAAAGACCACTGTTTGAAGCACCGGTTTGGCCCCGATCACAAATGTTCCGGTCCCAAAAAGTTGGAGACAAGTTTTTCATTCATGGGTCTTTTGAATAGGAGTAAAAAAGAGGAACCAAAGCCCAATTTAACTTCAACAGCATCATCTAAGTGGACTTCAAGCTTTCTCAACGTGGCTTCTAATATTCGTGCCTCAGCTGAAGCTGGCATGTCAAAATTGAGTGATGAAATTAACCAAGTTTGGCAGGCAGCTACTACAAGAGATGGGGTGGGACAGAGCAGTGGCAGTGGCAATAGAAATGATAATCAAGTGGAGCAATGCCCTCAATGTGGAGCAAAATTTTCCTCTGTGACTGCTTTGGTGGATCATGTGCAAAAAGTTCATGAAAAAAATGGGAACCGATTAGGGGTTAAGAAGATTGATGCATGTCCAAAGTGTAGTAGGGGATTTCTAGACCCGGTGTCCCTTGTGGAGCATGTTGAGAGGGATCATGGTGGTGGTTCTGGAGCGTAG 879 0.4471 MGTPEFPDLGKHCSVSDCKQLDFLPFTCDRCNQVYCLEHRGYIKHKCTKANKQDVTVVICPLCAKGVRLIPDQDPNITWDNHVNVDCDPSNYEKVTKKRKCPAPGCKEVLVFSNTIKCRDCLKDHCLKHRFGPDHKCSGPKKLETSFSFMGLLNRSKKEEPKPNLTSTASSKWTSSFLNVASNIRASAEAGMSKLSDEINQVWQAATTRDGVGQSSGSGNRNDNQVEQCPQCGAKFSSVTALVDHVQKVHEKNGNRLGVKKIDACPKCSRGFLDPVSLVEHVERDHGGGSGA 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02585 292 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Pumo5g02585 292 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Pumo5g02585 292 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Pumo5g02585 292 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Pumo5g02585 292 Gene3D - 2 58 IPR035896 -
Pumo5g02585 292 Gene3D - 86 168 IPR035896 -
Pumo5g02585 292 Pfam C2H2-type zinc finger 228 250 - -
Pumo5g02585 292 ProSitePatterns Zinc finger C2H2 type domain signature. 265 286 IPR013087 -
Pumo5g02585 292 SUPERFAMILY AN1-like Zinc finger 6 52 IPR035896 -
Pumo5g02585 292 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 255 - -
Pumo5g02585 292 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
Pumo5g02585 292 SMART c2h2final6 263 286 IPR013087 -
Pumo5g02585 292 SMART c2h2final6 227 250 IPR013087 -
Pumo5g02585 292 ProSitePatterns Zinc finger C2H2 type domain signature. 229 250 IPR013087 -
Pumo5g02585 292 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Pumo5g02585 292 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Pumo5g02585 292 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Pumo5g02585 292 Gene3D Classic Zinc Finger 194 289 - -
Pumo5g02585 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 227 255 IPR013087 -
Pumo5g02585 292 SUPERFAMILY beta-beta-alpha zinc fingers 228 282 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02585 Pumo-Chr5 71281822 71283723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02585 1 292 C2H2 Transcription Factor Family AT2G41835 60.678 2.19e-120 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo5g02585 zf-AN1 4.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02585 - - gmx:100806459 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02585 5 71281822 71283723 Pumo5g02585 5 71281822 71283723 ECH