Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02547 ATGGTTGCATTGTTCTCCCCTCCAGTGTTCTCAACCAAGGGATGGCTCTTAGAGGAGGAGGAGCCATATGATGTGTCCTCGGAGTACTCATTTCCCTATCAATTTTATTCGCCACAGACACAGATTGAGGTTGAAATTGAAAGGTCCACTGCACCTTCCCCTGACCCTGCCATGGTCAAAAAGCTTAGCCACAATGCTAGTGAACGTGATCGACGCAAGAAGGTCAATAACTTGGTCTCTTCACTTCGTTCGCTTCTTCCTGTGGCAGATCAAACGAAAAAAATGAGCATTCCGGCTACAGTTTCGCGAGTCTTAAAATACATACCCGAGTTACAACAGCAAGTGCAAGCACTAACTAAGAAAAAAGAGGAGCTTCTGTGCAGAATTTCTCGGCAATTGCAAGGAGATGCAGTGAACAAAGAATCTCAAAGGAGAATAATTTCCCACCACAACTCTGATTTTGTTGTTTCAACAAGTAGGCTCAACGATTGTGAAGCTGTTGTTCACATTTCCTCTCATGAGGCTCACAAGGCTCCACTATCTGAGATCTTGCACTGTTTAGAAAATAATGGCCTTCTTCTGCTAAATGCTTCCTCCTCTGAAACCTTTGGAGCAAGGGTCTTCTACAACTTGCATTTCCAGGTGGAAAAAACTCATAGATTAGAGTCCGAGATTCTAACTGAGAAGCTTTTGTCAATATATGAAAAGCAAAGGATTTTCTAA 723 0.4288 MVALFSPPVFSTKGWLLEEEEPYDVSSEYSFPYQFYSPQTQIEVEIERSTAPSPDPAMVKKLSHNASERDRRKKVNNLVSSLRSLLPVADQTKKMSIPATVSRVLKYIPELQQQVQALTKKKEELLCRISRQLQGDAVNKESQRRIISHHNSDFVVSTSRLNDCEAVVHISSHEAHKAPLSEILHCLENNGLLLLNASSSETFGARVFYNLHFQVEKTHRLESEILTEKLLSIYEKQRIF 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02547 240 Pfam Helix-loop-helix DNA-binding domain 60 112 IPR011598 GO:0046983
Pumo5g02547 240 Gene3D - 55 145 IPR036638 GO:0046983
Pumo5g02547 240 FunFam Transcription factor ORG2 55 140 - -
Pumo5g02547 240 Coils Coil 108 128 - -
Pumo5g02547 240 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 58 232 - -
Pumo5g02547 240 SMART finulus 65 117 IPR011598 GO:0046983
Pumo5g02547 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 60 130 IPR036638 GO:0046983
Pumo5g02547 240 CDD bHLH_AtORG2_like 60 133 - -
Pumo5g02547 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 59 111 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02547 Pumo-Chr5 70103743 70105748 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02547 55 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 49.457 4.04e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo5g02547 HLH 2.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02547 - - gmx:100803424 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02547 5 70103743 70105748 Pumo5g02547 5 70103743 70105748 ECH