Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02543 ATGGGGATGGCTGCAGAGTCACAGTTTCATGTCTTGGCTGTTGATGACAGCCTCATAGATAGGAAACTCATTGAGAAGCTCCTCAGAACCTCTTCCTACCAAGTTACTACAGTTGATTCTGGTAGCAAGGCTTTAGAGTTTCTGGGGTTGCGTGAGAATGATGAGAGCAACCCAAGTACACCATCTGTTTGTCCCAACAATCATCAGGAGGTGGAGGTGAATCTTGTTATAACAGATTACTGTATGCCTGGCATGACAGGCTATGACTTGCTTAAGAAAATCAAGGAATCTTCATCTTTGAGAAACATACCAGTGGTGATTATGTCATCTGAGAATGTGCCTTCAAGGATTAGCAGATGCTTGGAGGAAGGAGCAGAAGAATTTTTCTTGAAGCCTGTGAGGCTGTCAGATTTGAACAGGCTTAAACCCCATATGAAGAAAACCAAGTTGAAAGATCAAAAGCAAGGAACAGTAGAAAAGCTTGAAAACTCAGAAGTTCAACAGCAACAGCCACAACAAATCATCATCCAAAATGGCCAGCAACAAGCATCAAAATCCCAAGATCCTCCTCTGCCAGAGTCAGAGTCACATCCGCATCCACAACCAACAACTATTGAACAACAGCAACAATCACCACAACAACAAGCCAACAATAACAAGAGGAAGACCATGGAACAGGGGCTTTCACCTGAGACTGACAGAACAAGACCAAGATACAGTGGCATAGCCACTGTGGTATGA 741 0.4359 MGMAAESQFHVLAVDDSLIDRKLIEKLLRTSSYQVTTVDSGSKALEFLGLRENDESNPSTPSVCPNNHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNRLKPHMKKTKLKDQKQGTVEKLENSEVQQQQPQQIIIQNGQQQASKSQDPPLPESESHPHPQPTTIEQQQQSPQQQANNNKRKTMEQGLSPETDRTRPRYSGIATVV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02543 246 CDD REC_typeA_ARR 11 141 - -
Pumo5g02543 246 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 204 IPR045279 GO:0009736
Pumo5g02543 246 Pfam Response regulator receiver domain 11 138 IPR001789 GO:0000160
Pumo5g02543 246 SUPERFAMILY CheY-like 8 141 IPR011006 -
Pumo5g02543 246 MobiDBLite consensus disorder prediction 160 191 - -
Pumo5g02543 246 Gene3D - 10 235 - -
Pumo5g02543 246 MobiDBLite consensus disorder prediction 144 246 - -
Pumo5g02543 246 SMART REC_2 9 142 IPR001789 GO:0000160
Pumo5g02543 246 MobiDBLite consensus disorder prediction 198 225 - -
Pumo5g02543 246 ProSiteProfiles Response regulatory domain profile. 10 146 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02543 Pumo-Chr5 70021162 70023186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02543 1 246 Response Regulator Gene Family AT3G57040 63.600 5.72e-102 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo5g02543 Response_reg 1.9e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02543 K14492 - gmx:100814494 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02543 5 70021162 70023186 Pumo5g02543 5 70021162 70023186 ECH