Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02530 ATGTCCCTTGAAGAGTCGCTAAGATCTCTTTCCCTTGATTACCTCAACCTCCTCATCAACGGCCAGGCCTTCAGCGACGTCACTTTCAGCGTGGAGGGGCGCCTGGTCCACGCGCACCGCTGCATACTCGCGGCCAGGAGCCTCTTCTTCAGGAAATTCTTCTGTGGGCCGGACCCCCCGTCCGGCCTCGACCCCGCCGGCCCGCGAGTTCCTAACTCGCGGTCCGGGGTCATCCCCGTCAACTCGGTGGGCTATGAGGTGTTCCTCCTCATGCTCCAGTTTCTCTACAGTGGCCAGGTCTCCATCGTCCCTCAGAAGCACGAGGCCCGGCCCAATTGCAGCGAGCGCGGCTGCTGGCACACGCATTGCACCTCCGCCGTTGTTCTCGCCCTCGACACCCTCGCCGCCGCTAGATACTTCGGCGTCGAACAGCTCGCATTGCTCACTCAGAAACAACTTGCGAGCATGGTAGAGAAGGCTTCCATAGAGGATGTAATGAAAGTGCTGTTGGCATCAAGAAAGCAAGACATGCAGCAACTATGGGCCACTTGTTCTCACTTGGTGGCAAAATCGGGTCTCCCTCCCGAGGTTCTCGCCAAGCACCTCCCAATAGACATTGTGGCGAAGATCGAAGAGCTTCGTCTCAAATCCTCCCTGGCACGCCGCTCATTGGTGCCTTCTCACCACCACCATCACCACCACCACCACGCGGCCCTCGACCTCGAGGACCAGAAAATCCGACGAATGAGGCGGGCCTTGGACTCCTCCGATGTGGAACTCGTGAAGCTCATGGTAATGGGAGAGGGCCTTAACTTAGATGAGGCACTGGCCTTACCCTATGCGGTGGAGAATTGCAGCAGAGAAGTGGTGAAGGCCTTGCTTGAGCTCGGTGCAGCCGATGTCAACTACCCTTCCGGCCCCGCGGGGAAGACGCCGCTGCACATTGCGGCGGAGATGGTGTCCCCCGACATGGTGGCGGTGCTGCTGGACCACCACGCGGACCCGAACGTGAGAACCGTTGATGGGGTCACCCCTTTGGACATCCTCAGAACCCTAACCTCGGATTTCCTCTTCAAGGGTGCTGTCCCCGGATTGACCCACATCGAACCCAACAAGCTGAGGCTGTGCTTGGAGCTCGTTCAATCCGCTGCTCTTGTCATGTCGCGAGAAGAAGGAAATGCTAATAACAACAATGCTCCTAATTCTTCGACAGCACCCATTTACCCTCCTCCAATGAACGAGGATCACAACAACAGCAGCAGCAGCAGCGGCAACAACAACAACAACAACATTGGTAACCTCAACTTGGATTCGAGGTTGGTGTATCTCAACCTTGGTGCCACCGCTTCAATGAGTTCAAGGTTAGACGGTGCTGAGGACGAGAGAGAAGCCATGAACCAAACCATGTACCACCACCACTCTCATGACTTCTAG 1434 0.569 MSLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPAGPRVPNSRSGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEARPNCSERGCWHTHCTSAVVLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMQQLWATCSHLVAKSGLPPEVLAKHLPIDIVAKIEELRLKSSLARRSLVPSHHHHHHHHHAALDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVENCSREVVKALLELGAADVNYPSGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREEGNANNNNAPNSSTAPIYPPPMNEDHNNSSSSSGNNNNNNIGNLNLDSRLVYLNLGATASMSSRLDGAEDEREAMNQTMYHHHSHDF 477
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02530 477 MobiDBLite consensus disorder prediction 392 431 - -
Pumo5g02530 477 Gene3D - 233 356 IPR036770 -
Pumo5g02530 477 FunFam regulatory protein NPR5 isoform X1 4 190 - -
Pumo5g02530 477 ProSiteProfiles Ankyrin repeat profile. 308 340 IPR002110 GO:0005515
Pumo5g02530 477 SMART BTB_4 25 157 IPR000210 GO:0005515
Pumo5g02530 477 Gene3D Potassium Channel Kv1.1; Chain A 3 190 IPR011333 -
Pumo5g02530 477 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 469 IPR044284 GO:0099402
Pumo5g02530 477 Pfam BTB/POZ domain 16 106 IPR000210 GO:0005515
Pumo5g02530 477 SUPERFAMILY POZ domain 9 155 IPR011333 -
Pumo5g02530 477 Pfam Domain of unknown function (DUF3420) 192 250 IPR024228 -
Pumo5g02530 477 MobiDBLite consensus disorder prediction 413 431 - -
Pumo5g02530 477 CDD BTB_POZ_NPR_plant 8 157 - -
Pumo5g02530 477 ProSiteProfiles BTB domain profile. 25 104 IPR000210 GO:0005515
Pumo5g02530 477 ProSiteProfiles Ankyrin repeat region circular profile. 308 338 - -
Pumo5g02530 477 SUPERFAMILY Ankyrin repeat 267 351 IPR036770 -
Pumo5g02530 477 SMART ANK_2a 273 303 IPR002110 GO:0005515
Pumo5g02530 477 SMART ANK_2a 308 337 IPR002110 GO:0005515
Pumo5g02530 477 FunFam regulatory protein NPR5 isoform X2 239 356 - -
Pumo5g02530 477 Pfam Ankyrin repeats (3 copies) 256 338 IPR002110 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pumo5g02530 Pumo-Chr5 69837854 69841337 Dispersed
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pumo5g02530 BTB 5.2e-15 CL0033
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02530 K14508 - gmx:100816086 811.601
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02530 5 69837854 69841337 Pumo5g02530 5 69837854 69841337 ECH