Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02523 ATGGGTAGCAGAAGTAGAACGGTAAACGTTAACACTAACGACACTAACAAGGTTGTGAACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCTTCTAATTCCATGGCCCTAGAAGCAACTAATGTTCATCCTTCCCGCATTTCTGAATTTGGAACCCTGGAGCAATCTCTTGGATTTCGCGTTGAAGATACCATTAATCTTAGCAGAAATCCGATGTTTAATCAAATGAAATCAAATAGCCAAGCTCTACGTGCTGATATTCAATTTGGTGCTTTAAATAAGTCAATTGTAACATCAGATATAAACCTCTCTGCTGCTATTGCTGGGTCTCAGACATTGGCATTACAAAGAGACTCACAACCAACTCTTGCTTCGACATCTGCTGGTCATCGTGAGAATTGGGGAGAGACCAACATGGCTGATGCTAGCCCCAGGACTGATACTTCAACAGATGATACAGAAGACAAAAATCAAAGGCCTGAAAGGGGTGAATCCAGTGGATCAAAAGATAAATCAGATCAAAAGACGTTAAGACGTCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGCAGTAGGCTGAAACTGACCCAACTTGAGCAGGAGCTCCAGCGAGCTCGCCAGCAGGGAATATTTATTTCAAGCACTGGAGACCAGGCCCAGTCAATGAGTGGAAATGGCGCTATGGCATTTGATGTAGAGTACGCACGATGGTTAGAAGAGCATCATAGGCAAACCAATGAGCTAAGGGCTGCAATTAATTCTCATGCTGGAGATATTGAACTTCGTACCATTGTTGACAATTTCATGACGCAATTTGATGATATCTTCAGGCTGAAAGGTATTGCAGCAAAAGCTGATGTTTTCCACATTCTGTCAGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGTTTTCGCTCATCCGAACTCCTAAAGCTTCTTGTAAGTCAGTTGGAGCCTTTAACCGAGCAACAATTGATGGGCATCTACAACTTGCAGCAGTCATCCCAGCAGGCTGAAGACGCTCTTTCCCAAGGGATGGATGCATTGCAGCAATCACTGTCTGAGACATTGGCTAGTGGCTCGCCGAGCTCATCAGGCTCCTCGGGGAATGTGGCAAATTACATGGGGCAAATGGCTATGGCCATGGGAAAGCTTGGTACTCTTGAGGGGTTTCTTCGCCAGGCTGACAATCTGCGGCAGCAAACATTACAACAAATGCTTCGAATATTAACGACCAGGCAATCGGCTCGAGCTCTTCTCGCAATAAGTGATTATTTCTCGCGGCTGCGAGCGCTGAGTTCTCTATGGCTTGCCCGGCCAAGGGAGTGA 1386 0.4596 MGSRSRTVNVNTNDTNKVVNGMPSYAPPLPSSSNSMALEATNVHPSRISEFGTLEQSLGFRVEDTINLSRNPMFNQMKSNSQALRADIQFGALNKSIVTSDINLSAAIAGSQTLALQRDSQPTLASTSAGHRENWGETNMADASPRTDTSTDDTEDKNQRPERGESSGSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGDQAQSMSGNGAMAFDVEYARWLEEHHRQTNELRAAINSHAGDIELRTIVDNFMTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLASGSPSSSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02523 461 MobiDBLite consensus disorder prediction 148 178 - -
Pumo5g02523 461 MobiDBLite consensus disorder prediction 1 22 - -
Pumo5g02523 461 PANTHER TRANSCRIPTION FACTOR TGA9 131 461 - -
Pumo5g02523 461 SMART brlzneu 172 235 IPR004827 GO:0003700|GO:0006355
Pumo5g02523 461 Pfam Basic region leucine zipper 172 218 IPR004827 GO:0003700|GO:0006355
Pumo5g02523 461 Coils Coil 195 222 - -
Pumo5g02523 461 ProSiteProfiles DOG1 domain profile. 241 458 IPR025422 GO:0006351|GO:0043565
Pumo5g02523 461 SUPERFAMILY Leucine zipper domain 176 219 IPR046347 GO:0003700|GO:0006355
Pumo5g02523 461 MobiDBLite consensus disorder prediction 114 178 - -
Pumo5g02523 461 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 174 218 IPR004827 GO:0003700|GO:0006355
Pumo5g02523 461 MobiDBLite consensus disorder prediction 114 147 - -
Pumo5g02523 461 Pfam Seed dormancy control 259 334 IPR025422 GO:0006351|GO:0043565
Pumo5g02523 461 FunFam BZIP family transcription factor 175 224 - -
Pumo5g02523 461 CDD bZIP_HBP1b-like 176 228 - -
Pumo5g02523 461 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 179 194 IPR004827 GO:0003700|GO:0006355
Pumo5g02523 461 Gene3D - 175 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02523 Pumo-Chr5 69661398 69668019 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02523 140 461 bZIP Transcription Factor Family AT3G12250 74.320 5.60e-171 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pumo5g02523 DOG1 8.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02523 K14431 - gmx:100780071 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02523 5 69661398 69668019 Pumo5g02523 5 69661398 69668019 ECH