Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02506 ATGCACCACTTTGCCATGGACAACTCTCACCTCCTCCAATTCCTTCCCAACACCACCACCAACACCAACAACACCCCCTTCTTCCATGCTGCACCACACACTCACTCTCACACCACCAATATCATGCACCACCACCACCACACCACCCTCTCTACTAATTCCTCCAATAATAATTACTACCCCTTCCACCTCTCCCAAATTACCGAAACACCCTCCCACCATGATAGAGCCCTTGCTGCCATGAAGAACCACAAGGAAGCTGAGAAGAGAAGAAGGGAGAGAATCAATTCCCACCTTGACGAGCTTCGCACTCTTCTCCCTTGTAATTCCAAGACAGACAAGGCTTCGCTTCTGGCGAAGGTTGTCCAGCGGGTGAAGGAGTTGAAGCAGCAAACCTCGGAAATCACCGAACTCGAAACCGTTCCGTCAGAGACGGACGAGATCACGGTGCTCTCCACCGGCGGCGACTACGCCGGTGGCGACGGAAGGCTCATCTTCAAGGCCTCACTGTGCTGCGAGGACCGCTCCGACCTCATCCCGGACCTCATAGAAATCCTGAACTCGCTTCACCTCAAAACCCTCAAAGCCGAAATGGCCACGCTCGGAGGAAGAACGCGCAACGTTCTCGTGGTCGCTGCTGACAAAGAACACAGCATTGAATCCATCCATTTCCTCCAGAACTCGCTCAAGTCCTTGCTAGACCGATCCAGTTCCAGCGACAGGTCGAAACGACGCCGTGGCTTAGACCGAAGGCTAATGTCTTAA 765 0.5346 MHHFAMDNSHLLQFLPNTTTNTNNTPFFHAAPHTHSHTTNIMHHHHHTTLSTNSSNNNYYPFHLSQITETPSHHDRALAAMKNHKEAEKRRRERINSHLDELRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITELETVPSETDEITVLSTGGDYAGGDGRLIFKASLCCEDRSDLIPDLIEILNSLHLKTLKAEMATLGGRTRNVLVVAADKEHSIESIHFLQNSLKSLLDRSSSSDRSKRRRGLDRRLMS 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02506 254 Coils Coil 85 105 - -
Pumo5g02506 254 PANTHER TRANSCRIPTION FACTOR BHLH30 37 248 IPR045847 GO:0003700|GO:0006355
Pumo5g02506 254 Gene3D - 74 140 IPR036638 GO:0046983
Pumo5g02506 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 136 IPR036638 GO:0046983
Pumo5g02506 254 SMART finulus 85 134 IPR011598 GO:0046983
Pumo5g02506 254 CDD bHLH_AtAIG1_like 75 150 - -
Pumo5g02506 254 FunFam transcription factor bHLH30 74 137 - -
Pumo5g02506 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 79 128 IPR011598 GO:0046983
Pumo5g02506 254 Pfam Helix-loop-helix DNA-binding domain 83 128 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02506 Pumo-Chr5 69346776 69348846 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02506 59 239 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 70.652 3.18e-79 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo5g02506 HLH 4.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02506 - K22484 gmx:100802566 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02506 5 69346776 69348846 Pumo5g02506 5 69346776 69348846 ECH