Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02501 ATGACCATGCTACCTCAGTCATTTACTATGATTGCAACAATAATTCTTGTTCTTGCACAAACACTTGTGGGGGTGAGTTCACTTCCTGAAGCTGATAAAATAACCAATTTGCCGGGGCAGCCACAGGTCAAATTTCAGCAATATTCTGGTTATGTTACCGTGGATGATCAACACCAAAGAGCTTTGTTTTACTACTTTGTTGAAGCTGAAGAAGACCCTGCTTCCAAGCCATTAGTCCTCTGGTTGAATGGAGGGCCTGGTTGTTCATCGATTGGAGCTGGAGCTTTTGCTGAGCATGGTCCTCTCAGACCGAGTGACAACAATGTTCTTGAGAAAAATGATTATAGTTGGAACAAAGTGGCAAATGTGATATACTTGGAGTCACCAGCTGGTGTTGGATTCTCTTACTCCAGCAATAAATCTTTCTATGCCTTAGTGACAGATGAGATTACAGCTAGGGATAATCTTGTTTTCCTACAGCGTTGGTTCACTAAATTCCCTGAGTACTCAAATAACGACTTCTTCATCACAGGGGAGAGCTATGGAGGTCACTATGTTCCACAACTTGCACAACTTATTGTTCAAACCAAGACCAACATCAATCTCAAGGGAATAGCAATAGGGAATCCTCTTCTTGAGTTTATTACTGATTTCAACTCCAGATCTGAGTTCTTTTGGTCTCACGGGCTGATATCAGATTCAACATACGAAGTCTTAACTAGAGTCTGCAACTATTCCTCAATTAGGAGACAAATTCAAAATGGGAATCTTAAAGGCGCTTGTGAAAAAACAAATAATCTATTGAGTGCTGAGATTAGCAACTATGTAGATGAATATGATGTCACTCTCGATGTTTGTTTGTCATCAGTAAATCAACAGGCTTATGTGCTGAATCAACTGCAAGAGACACAGAAGATAGATGTTTGTATTGGTGATAAAACAACCACATACTTGAACAGAAAAGAAGTCCAAGAAGCTTTGCATGCTAAACTTGTTGGAGTCACGAAATGGTCAACTTGCAGCTCAGTTCTGCATTATGACTATCAGAATCTAGAAATACCAACAATTCCTATTCTAGGGTCACTTGTTAAGTCTGGCATCAGGGTTCTAGTATACAGCGGAGATCAAGATTCAGTGATTCCATTAATTGGTTCGCGATCTCTAGTGAACGGATTAGCCAAGGAAATTGGACTTGATACAACAGTGGCCTATAGAGCCTGGTTTGAGGAAAAACAGGTGGCAGGATGGACACAAGTATATGGGGACATCTTATCATATGCCACTATAAGAGGAGCAGCTCATGAAGCTCCCTTTTCTCAACCACAGAGATCACTAGTGCTACTTAAAGCATTTCTTGAAGGAAAACCATTACCTAGTTTTAAATAA 1386 0.4026 MTMLPQSFTMIATIILVLAQTLVGVSSLPEADKITNLPGQPQVKFQQYSGYVTVDDQHQRALFYYFVEAEEDPASKPLVLWLNGGPGCSSIGAGAFAEHGPLRPSDNNVLEKNDYSWNKVANVIYLESPAGVGFSYSSNKSFYALVTDEITARDNLVFLQRWFTKFPEYSNNDFFITGESYGGHYVPQLAQLIVQTKTNINLKGIAIGNPLLEFITDFNSRSEFFWSHGLISDSTYEVLTRVCNYSSIRRQIQNGNLKGACEKTNNLLSAEISNYVDEYDVTLDVCLSSVNQQAYVLNQLQETQKIDVCIGDKTTTYLNRKEVQEALHAKLVGVTKWSTCSSVLHYDYQNLEIPTIPILGSLVKSGIRVLVYSGDQDSVIPLIGSRSLVNGLAKEIGLDTTVAYRAWFEEKQVAGWTQVYGDILSYATIRGAAHEAPFSQPQRSLVLLKAFLEGKPLPSFK 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02501 461 Pfam Serine carboxypeptidase 38 454 IPR001563 GO:0004185|GO:0006508
Pumo5g02501 461 FunFam Carboxypeptidase 27 458 - -
Pumo5g02501 461 Gene3D - 355 454 - -
Pumo5g02501 461 FunFam Carboxypeptidase 355 454 - -
Pumo5g02501 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Pumo5g02501 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Pumo5g02501 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Pumo5g02501 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 424 437 IPR001563 GO:0004185|GO:0006508
Pumo5g02501 461 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 33 441 IPR001563 GO:0004185|GO:0006508
Pumo5g02501 461 Gene3D alpha/beta hydrolase 29 288 IPR029058 -
Pumo5g02501 461 SUPERFAMILY alpha/beta-Hydrolases 34 458 IPR029058 -
Pumo5g02501 461 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Pumo5g02501 461 Gene3D - 309 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02501 Pumo-Chr5 69256082 69273343 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02501 317 457 Calmodulin-binding Proteins AT2G22960 32.624 8.97e-21 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02501 K16297 - gmx:100799900 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02501 5 69256082 69273343 Pumo5g02501 5 69256082 69273343 ECH