Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02497 ATGGATTCTTGGCAAGAAGAAGACGATGAGCGAAGTCCAGACTCCTCATCATCAGAGATATACCTGTTGGGCTTCGTGGTGGCCAACATCGTGGGCCTGCAGCACCACCCGGGCACCATCCACGGCCGCGCCCTCGTGGGCCTGGTCCGCGAGGCCCACAACCCGCACGACCCAAACGCCATCCAAGCCGTCAACACCCACAACCTCCTCGTCGGCTACATCGAACGCTCCGTCGCCGCCGTCCTGTCCCCCCTCATCGACGACAACCTCGTCAAGGTCGAGGCCATCGTCCCCAACGCCCGCAAAACCAACAGAGTCCACGTCTGCCAAGTCCACGTCTTCGCTCGCGTCCACGACTTTGACGCCGTCGAAGACGCCGTCTCCGATGGGGGCCTCAAACTCATCACCGAGTCCGACGCCGCCTTCGCCCTCTCCGACTCCGTCGCGGTTAAGGAGACCCGGGCGCAGAAGAAGTCAACCTCCGTCGACGCCATTTTCAAAAGGGTCAGCCGAAGCTACTCCTCCGGGAGCAAGAACGTCGCCATCCAAACCCTGGAGCCTCCGAGGATGATCATCAAAACGGAGCTTCTCCAACACCAGAAGGAGGGTCTCGCGTGGCTCGTTCGCCGTGAAAAATCCGATGATCTGCCACCGTTTTGGGAAGAAAGCAATGGTAAATTCGTGAATATCTTAACCGATTATCAGACAGATAACAGGCCTGGCCCTTTACGAGGTGGCATCTTCGCCGATGAGATGGGGTTGGGAAAGACCCTAACTTTGCTTTCTTTGATCGCTTTTGATAAAAAGGGCCAAATGGGTGTCTCTAAGAAGTGGAGAACGGACAGAAAGGTGGTTACTTTAGAGAAACGACGCATGAACATGAATGAAAGTGAGAGCTCCCTTGATGCGGGAATGAGAACAAATGCAACTTTGGTGGTGTGTCCTCCTACTGTTATGTCTACATGGATTACGCAATTGGAGGAACACACTGAGCCTGGTGCATTGAAGACTTATTTGTATTATGGAGAAAGAAGGACCAAGAATGCTGAGGACCTCAAGATGTATGATCTGGTGTTGACTACTTACTCTACTCTGTCCAGTGAACAGCAAATGCCGGAGATGCCGGCAAAGAAAATGGAGTGGCGGAGAATTGTATTGGATGAGGCACACACCATCAAGAATTTCAATTCTAAACAGAGTGTGGCGGTCTCCAAGTTGAATGGTCAGTGCAGGTGGGCTGTCACAGGGACACCGATTCAAAGTGGTTGTATTGATTTGTTTTCTATTATGGTCTTTTTGCGGTTTGAACCATTTTCGGTGAGATATTCTTGGAGAGAGTTGGTGCAACGCCCTCTTAATCAGGGCAAAGACAAAGGGCTCTCACGTTTGCAGGTTTTGATGGGTGCAATTGCTTTGCGAAGAACAAAAGATATGGCATTGGTGGGGCTGCCTCCAAAAACCACTGAGATTTGTTATGTCGAGCTTTCTTTGGAAGAACGTCAACTGTATGATCAGATGAAAGAGGAAACAAAGACATTGTGGAGTAGGTTTGGCAACGAGGACAGTCTATTGCCCCATTATTCTGCTGTACTAAGTAGGATTCTAAGACTTCGCCAAATCTGTGCTGATTTGAAATTGTGTAAAGATCAGTCGCTACTCCTTACAAATATTGAAGATGTTTCCAATAATCCTGAATTGCTGCAATCATTACTTAGGCAGATGCAAGATGGTGAAGATTTTGACTGTCCAATTTGTTATTCTCCACCGATAGAGATTGTGATCACATGTTGTGCTCACATTTTCTGCCGCGGCTGTATTCTGAAAATTCTGCAAAAGAGCAACCCCAGTTGTCCTCTTTGCCGGAACCCCCTCTCAGAATCTGACTTGTTCTCAGCCCCTCCCGAGTCTTCCGAGGCAGATAGTGCTGAACCGTGCTCATCATCAGAAACAGGGCTATCCTCCAAAGTATCTACACTGATAAAACTTCTTACAGAATCGAGGGACCAACATCCAGCTGCAAAGTCAGTGGTATTTTCACAATTTCGAAAGCTGCTATTGATAATGGAAGGGCCTCTGAATGCAGCTGGATTCAAGACCACGCGTCTTGATGGGACAATGGATGCTAAAAGCAGGGCCAAGGTTATTGAGAAGTTTCAAGCCCAAGGAAGAGACGGGCCAACAGTTTTGCTTGCAAGCCTCAGAGCTTCAAGTGCAGGTATAAATCTCACATCTGCCTCTAGACTGTACTTTATGGAGCCATGGTGGAACCATGCAGTTGAGGAACAGGCAATGGACCGTGTCCACCGCATTGGACAGAAAGAGGCTGTGAAGATTGTTCGATTGATTGCTCGGAACAGCATTGAAGAGAAAATGTTGAATTTGCAGGAGGAGAAGAAACAACTATCCAGGGAACCATCTGGGACAGGATTAAAGGGCATGGATACGAAAGATATTCGTTTCCTTTTGGATCACTAG 2475 0.4889 MDSWQEEDDERSPDSSSSEIYLLGFVVANIVGLQHHPGTIHGRALVGLVREAHNPHDPNAIQAVNTHNLLVGYIERSVAAVLSPLIDDNLVKVEAIVPNARKTNRVHVCQVHVFARVHDFDAVEDAVSDGGLKLITESDAAFALSDSVAVKETRAQKKSTSVDAIFKRVSRSYSSGSKNVAIQTLEPPRMIIKTELLQHQKEGLAWLVRREKSDDLPPFWEESNGKFVNILTDYQTDNRPGPLRGGIFADEMGLGKTLTLLSLIAFDKKGQMGVSKKWRTDRKVVTLEKRRMNMNESESSLDAGMRTNATLVVCPPTVMSTWITQLEEHTEPGALKTYLYYGERRTKNAEDLKMYDLVLTTYSTLSSEQQMPEMPAKKMEWRRIVLDEAHTIKNFNSKQSVAVSKLNGQCRWAVTGTPIQSGCIDLFSIMVFLRFEPFSVRYSWRELVQRPLNQGKDKGLSRLQVLMGAIALRRTKDMALVGLPPKTTEICYVELSLEERQLYDQMKEETKTLWSRFGNEDSLLPHYSAVLSRILRLRQICADLKLCKDQSLLLTNIEDVSNNPELLQSLLRQMQDGEDFDCPICYSPPIEIVITCCAHIFCRGCILKILQKSNPSCPLCRNPLSESDLFSAPPESSEADSAEPCSSSETGLSSKVSTLIKLLTESRDQHPAAKSVVFSQFRKLLLIMEGPLNAAGFKTTRLDGTMDAKSRAKVIEKFQAQGRDGPTVLLASLRASSAGINLTSASRLYFMEPWWNHAVEEQAMDRVHRIGQKEAVKIVRLIARNSIEEKMLNLQEEKKQLSREPSGTGLKGMDTKDIRFLLDH 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02497 824 SUPERFAMILY RING/U-box 565 627 - -
Pumo5g02497 824 CDD SF2_C_SNF 652 782 - -
Pumo5g02497 824 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 237 436 IPR014001 -
Pumo5g02497 824 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 474 IPR027417 -
Pumo5g02497 824 ProSiteProfiles Zinc finger RING-type profile. 582 621 IPR001841 -
Pumo5g02497 824 SMART helicmild6 686 771 IPR001650 -
Pumo5g02497 824 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 567 635 IPR013083 -
Pumo5g02497 824 Coils Coil 784 804 - -
Pumo5g02497 824 CDD RING-HC_HLTF 577 629 - -
Pumo5g02497 824 SMART ultradead3 192 455 IPR014001 -
Pumo5g02497 824 Gene3D - 232 475 IPR038718 -
Pumo5g02497 824 Gene3D - 14 134 - -
Pumo5g02497 824 Pfam Helicase conserved C-terminal domain 655 771 IPR001650 -
Pumo5g02497 824 Pfam Zinc finger, C3HC4 type (RING finger) 579 625 - -
Pumo5g02497 824 ProSitePatterns Zinc finger RING-type signature. 597 606 IPR017907 -
Pumo5g02497 824 SMART ring_2 582 620 IPR001841 -
Pumo5g02497 824 SMART HIRAN_2 23 115 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pumo5g02497 824 Pfam HIRAN domain 23 103 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pumo5g02497 824 Gene3D - 484 823 IPR027417 -
Pumo5g02497 824 Pfam SNF2-related domain 199 545 IPR000330 GO:0005524|GO:0140658
Pumo5g02497 824 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 658 818 IPR001650 -
Pumo5g02497 824 MobiDBLite consensus disorder prediction 631 651 - -
Pumo5g02497 824 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 149 821 - -
Pumo5g02497 824 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 475 822 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02497 Pumo-Chr5 69057080 69061688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02497 7 804 RAD5 or RAD16-like Gene Family AT5G05130 55.327 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo5g02497 SNF2_N 2e-73 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02497 K15711 - gmx:100791783 1271.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02497 5 69057080 69061688 Pumo5g02497 5 69057080 69061688 ECH