Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02496 ATGAAGTCCTGGTCACTGGATGAGTGGAGGAAATACTTTGGGTCAGCGAATTCGGATATATTTGAGATAATTGAGCACGCGATAATTGTGGCGGCTTCGGATTGTCCGAAGGAGTTTAGAGTGAGGAGGGATGGGATTGCAGAGAAGTTGTTTTCTTGCAGGTTGACTCGGTGTGTGGGGTGTGACCGAGTGGAGTTGGCTGTGGCTGGGGATGGTAAAGAGAAAGATGATGATGGTGATGATGATGATAAGAGTGGGTTTGAGAGAGATGGGGTTGAGTTTGAAGGTGCAGGGGCAAGTAAAGAGAGCAAGGTCAATGGGGATGGAGAGAGGGATGTGAATCTTGGTAGCAATTATAGCTTTGGGGAGGCTGAGGCATTGAGTGACGAGATGGAAGAGGAGTCTCAGTATATAGGGGAGATTATGAGGATCAAGGATGTTCTGACTAACCATGAAGATGAGTCTGAGGCTGTGATATTTGATTCATTGAGGAGGCTTCAGTTGATGGAACTCACCGTGGACTGTTTAAAGACAACTGAGATTGGCAAGGCTGTCAATCCTCTCAGAAAGCATGGATCGAAGCACATTTGTCAACTTGCTAGGACTCTCATTGTTGGCTGGAAAGAATTGGTAGATGAATGGGTTAAGGCCACTACTACCACAGCTATCGCAGGTTCAGAAGAAGGCACACCGGATTCAGTGAATCCATCTGTTATAGATGATGAAGAAGAAGAAGAAGAAGAAGGACTTCCATCACCTCCCATGGATGAAGGGGCTTTCTTTGTCACCCAAGCTGGTTCAATAGAACTGTCACAGTTCTTTGATGGCATGGACGATGAAGGAAATCCTCGACCAAGTCGGCCATTCAGCAAGAACCAGGAGAATGGCAGAAAACCGACTTTCAACAGTCATGTTGTAGAGAAGAGGAAGTCGCAGGCTTCCCATGGGACAGCTATCATTAACAGGGATGTTAAGAGTCAGCAGCAAGCAAAGAAAAATGAGGCTGCTGTGCCTGTGAGGCCAAATAAACCAGTAACCACTGATTCTGGGCCTGGCAGACCCCCAAAATCAAATATGCAGAGAAAAAGTAATATGGAGCCAAAGATGCAGCAAAAAATAGAGAACAATTCAATCCCAAAGAGGCCTCCCACTGGTCAACTAGATAAATCCATGCGTTCAGATGACGCGGCAGTCCAAGTGAAGCTAGAAGCCACCAAGAGGAAACTTCAGGAGAGCTATCAACAAGCTGAAAATGCCAAGAGGCAGAGAACAATACAAGTCATGGAAATAAACGATCTCCCCAAGCAAGTTGTCCACCGAAATCCACATTTCAAACCTGGATATCACAATAGGCACTGGGCTAATGGTCGAAGATAA 1377 0.4597 MKSWSLDEWRKYFGSANSDIFEIIEHAIIVAASDCPKEFRVRRDGIAEKLFSCRLTRCVGCDRVELAVAGDGKEKDDDGDDDDKSGFERDGVEFEGAGASKESKVNGDGERDVNLGSNYSFGEAEALSDEMEEESQYIGEIMRIKDVLTNHEDESEAVIFDSLRRLQLMELTVDCLKTTEIGKAVNPLRKHGSKHICQLARTLIVGWKELVDEWVKATTTTAIAGSEEGTPDSVNPSVIDDEEEEEEEGLPSPPMDEGAFFVTQAGSIELSQFFDGMDDEGNPRPSRPFSKNQENGRKPTFNSHVVEKRKSQASHGTAIINRDVKSQQQAKKNEAAVPVRPNKPVTTDSGPGRPPKSNMQRKSNMEPKMQQKIENNSIPKRPPTGQLDKSMRSDDAAVQVKLEATKRKLQESYQQAENAKRQRTIQVMEINDLPKQVVHRNPHFKPGYHNRHWANGRR 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02496 458 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 129 223 IPR035441 -
Pumo5g02496 458 MobiDBLite consensus disorder prediction 274 396 - -
Pumo5g02496 458 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 446 IPR044805 -
Pumo5g02496 458 CDD TFIIS_I 138 212 - -
Pumo5g02496 458 MobiDBLite consensus disorder prediction 439 458 - -
Pumo5g02496 458 MobiDBLite consensus disorder prediction 286 300 - -
Pumo5g02496 458 MobiDBLite consensus disorder prediction 222 258 - -
Pumo5g02496 458 Pfam TFIIS helical bundle-like domain 163 211 IPR017923 -
Pumo5g02496 458 ProSiteProfiles TFIIS N-terminal domain profile. 139 214 IPR017923 -
Pumo5g02496 458 MobiDBLite consensus disorder prediction 351 383 - -
Pumo5g02496 458 SMART TFS2_5 138 213 IPR003617 GO:0005634
Pumo5g02496 458 MobiDBLite consensus disorder prediction 71 90 - -
Pumo5g02496 458 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 137 219 IPR035441 -
Pumo5g02496 458 MobiDBLite consensus disorder prediction 314 333 - -
Pumo5g02496 458 MobiDBLite consensus disorder prediction 442 458 - -
Pumo5g02496 458 MobiDBLite consensus disorder prediction 237 252 - -
Pumo5g02496 458 Coils Coil 399 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02496 Pumo-Chr5 69015023 69018740 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pumo5g02496 Med26 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02496 - - gmx:100799367 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02496 5 69015023 69018740 Pumo5g02496 5 69015023 69018740 ECH