Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02492 ATGGCATCAAGACCCATCATCGTTCAACTACAGGCCAGAGGTGAAGCAGTGGTGGAGGGAGGGAAACAGCAGAAGAAGAATGATGCAACAAAGGGAAGGAACCGCAGAGCACTTGGTGATATTGGGAATTGGAATTTGGTCAATGTAAGAGGAGTTGAGGTCAAGCCAAATCGCCCCATCACAAGGAGGTTTGGTGCCCAACTACTTGCCAATGCGCAAGCACCAGCAGCTGCTGAAAATAACAAGAAACAAGCTTGTGCTAATGTGGCTGGACCTCCTCTTGTTGCTAATGGAGTTGCAGTGGCCAAAAGAGTGGACCCTAAACTGGGTCAGAAGAAAGTCACTATAAAACCAAAGCCTGAGGAAGCCATTGACATTGATGCTAGCCCAGACAAGGAGATCCAGAAAGACAAGAAAAAGGAAGGAGATGCCATCTCCAAAAAGAAATCACGCAGTCTTACTTCAGTGCTCACAGCTCGAAGCAAGGCAGCATTCGGCATAACTAACAAGCTGAAGGAGCAGATTATTGACATTGATGCCGGTGATGTTGACAATGAGCTTGCTGCTGTGGAGTATATTGATGACATTTACAAGTTCTATAAGCTTGTGGAGAACGAGAGTCACCCCCATGACTACATGGACTCACAAACTGAGATAAATGAGAGGATGAGAGCTATACTGGTTGATTGGCTGATAGAAGTCCACACCAAGTTTGACCTTTCACTTGAGACCCTTTACTTGACAATCAATATAGTTGATCGGTTCCTGGCAGTTAAGAATGTTCCAAAGAGGGAACTGCAATTGGTTGGCATCAGTGCCATGCTGATGGCAACCAAGTATGAAGAAATCCGTCCCCCTCAGGTTAATTACTTTGTCTGCCTCTCAGATAGGGCTTACACTAGTGAACAGATACTGGCCATGGAGAAAATCATATTGGGCAAGCTGGAATGGACTTTGACTGTGCCGACACCTCTTGTTTTCCTAGTTCGTTTTATCAAGGCATCAATCCCAGATAAGGATGTAAGTTTGGGAATGATGAATTATGCCACCTTAATGTATCGCCCATCAATGATTGCTGCTTCAGCAATCTTTGCAGCTAGATACACTCTGAATAAGGCTCCCCTTTGGAATGAGACACTTAAGCTGCACACAGGTTACTCACAAGAACAACTTATGGATTGTGCTAGATTATTGGTGAGCTTCCACTCCACGGCTGGGAATGGAAAGCTAAAGGCTGTGTACAGAAAGTATTCTAATCCTCAGATAGGAGCTGTTGCTTTGCTCCCACCAGCTAAAAATCTTCTGCCTGAAGGTTCCTGCCTCCCAATAGAGTTAAAGACACAAAGGGAGAACCAGTGA 1359 0.4511 MASRPIIVQLQARGEAVVEGGKQQKKNDATKGRNRRALGDIGNWNLVNVRGVEVKPNRPITRRFGAQLLANAQAPAAAENNKKQACANVAGPPLVANGVAVAKRVDPKLGQKKVTIKPKPEEAIDIDASPDKEIQKDKKKEGDAISKKKSRSLTSVLTARSKAAFGITNKLKEQIIDIDAGDVDNELAAVEYIDDIYKFYKLVENESHPHDYMDSQTEINERMRAILVDWLIEVHTKFDLSLETLYLTINIVDRFLAVKNVPKRELQLVGISAMLMATKYEEIRPPQVNYFVCLSDRAYTSEQILAMEKIILGKLEWTLTVPTPLVFLVRFIKASIPDKDVSLGMMNYATLMYRPSMIAASAIFAARYTLNKAPLWNETLKLHTGYSQEQLMDCARLLVSFHSTAGNGKLKAVYRKYSNPQIGAVALLPPAKNLLPEGSCLPIELKTQRENQ 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02492 452 ProSitePatterns Cyclins signature. 224 255 IPR006671 -
Pumo5g02492 452 FunFam G2/mitotic-specific cyclin 208 315 - -
Pumo5g02492 452 PIRSF Cyclin_A_B_D_E 1 441 IPR046965 GO:0016538|GO:0044772
Pumo5g02492 452 SUPERFAMILY Cyclin-like 184 319 IPR036915 -
Pumo5g02492 452 Gene3D - 195 427 - -
Pumo5g02492 452 SUPERFAMILY Cyclin-like 321 432 IPR036915 -
Pumo5g02492 452 CDD CYCLIN_AtCycB-like_rpt2 322 430 - -
Pumo5g02492 452 Pfam Cyclin, C-terminal domain 322 430 IPR004367 -
Pumo5g02492 452 Gene3D - 209 320 - -
Pumo5g02492 452 SMART cyclin_7 326 400 IPR013763 -
Pumo5g02492 452 SMART cyclin_7 229 313 IPR013763 -
Pumo5g02492 452 SMART Cyclin_C_2 322 431 IPR004367 -
Pumo5g02492 452 Pfam Cyclin, N-terminal domain 195 319 IPR006671 -
Pumo5g02492 452 PANTHER CYCLINS 143 419 IPR039361 -
Pumo5g02492 452 FunFam G2/mitotic-specific cyclin-1 316 426 - -
Pumo5g02492 452 CDD CYCLIN_AtCycB-like_rpt1 172 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02492 Pumo-Chr5 68922280 68925241 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02492 1 435 Core Cell Cycle Gene Families AT4G37490 49.890 7.69e-125 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02492 K21777 - gmx:547919 676.011