Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02490 ATGGCGTCAAGAGCAATTGTTCAACAACAACAAGCCAGAGGTGAAGCAGTAGTAGGGGGAGGAAAACAGCAGAAGAAGAACGGTGTAGCGGATGGAAGGAACCGCAAGGCATTAGGTGATATTGGGAACTTGGCCAATGTAAGAGGAGTTGAAGTCAAACCAAATCGCCCCATCACAAGGAGTTTTGGTGCCCAACTACTTGCCAATGCACAAGCGGCAGCGGCTGCTGAGAATAACAAGAAACAAGCTTGTGCTAATGTGGCTGGTCCTCCTGCTGTTGCTAATGGAGGTGCATTGCCAGTGGCCAAAAGAGCAGCCCCCAAACCGGGTCAGAAGAAAGTCACCGTTAAACCAAAACCTGACGAAGTCATTGACATTGAAACTAGTCCAGATAAGGAGGTCCAGAAAGACAAGAAAAAGGAAGGAGATGCCAATTCCAAGAAGAAATCACACACTCTTACTTCAGTGCTCACTGCTAGAAGCAAGGCAGCATGTGGTATAACTAACAAACCGAAGGAGCAGATAATTGACATTGATGCTGGTGATGTTGACAATGAGCTTGCTGCTGTGGAGTATATTGATGACATTTACAAGTTCTATAAACTTGTTGAGAACGAGAGCCGCCCCCATGACTACATAGACTCACAGCCTGAGATAAATGAGAGGATGAGAGCTATACTGGTTGATTGGCTGATTGATGTCCACACCAAGTTTGAACTTTCTCTTGAGACCCTTTACCTGACCATCAATATAATTGACCGGTTCCTCGCAGTTAAGACAGTTTCAAGGAGGGAACTGCAATTGGTTGGCATCAGTGCCATGCTGATGGCAGCCAAATATGAAGAAATCTGGCCCCCTGAGGTTAATGACTTTGTCTGCCTCTCAGACAGGGCTTACACTCATGAACAGATACTGATCATGGAGAAAACCATACTGGGCAAGCTGGAATGGACTTTGACTGTGCCTACACCTTTTGTTTTCCTAGTTCGTTTTATCAAGGCATCAGTCCCAGATCAGATGTTGGAAAACATGGCCCATTTTCTGTCTGAGTTGGGAATGATGAATTATGCCACCTTAATGTATTGCCCATCCATGCTTGCTGCCTCAGCAGTGTATGCAGCTAGATGCACTCTGAATAAGACTCCCCTTTGGAATGAGACACTTAAGCTGCACACCGGTTACTCACAAGAGCAACTCATGGATTGTGCCAGACTGTTGGTGGGCTTCCACTCCAGTGTTGGGAATGGAAAGCTTAGGGTTGTGTACAGAAAGTATTCTGATCCTCAGAAGGGAGCTGTTGCTGTGCTCCCACCAGCTAAATGTCTTCTGCCCGAAGGTTCTGCCTCCCAACAGAGTTAA 1359 0.4636 MASRAIVQQQQARGEAVVGGGKQQKKNGVADGRNRKALGDIGNLANVRGVEVKPNRPITRSFGAQLLANAQAAAAAENNKKQACANVAGPPAVANGGALPVAKRAAPKPGQKKVTVKPKPDEVIDIETSPDKEVQKDKKKEGDANSKKKSHTLTSVLTARSKAACGITNKPKEQIIDIDAGDVDNELAAVEYIDDIYKFYKLVENESRPHDYIDSQPEINERMRAILVDWLIDVHTKFELSLETLYLTINIIDRFLAVKTVSRRELQLVGISAMLMAAKYEEIWPPEVNDFVCLSDRAYTHEQILIMEKTILGKLEWTLTVPTPFVFLVRFIKASVPDQMLENMAHFLSELGMMNYATLMYCPSMLAASAVYAARCTLNKTPLWNETLKLHTGYSQEQLMDCARLLVGFHSSVGNGKLRVVYRKYSDPQKGAVAVLPPAKCLLPEGSASQQS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02490 452 ProSitePatterns Cyclins signature. 224 255 IPR006671 -
Pumo5g02490 452 CDD CYCLIN_AtCycB-like_rpt2 322 438 - -
Pumo5g02490 452 PANTHER CYCLINS 143 430 IPR039361 -
Pumo5g02490 452 PIRSF Cyclin_A_B_D_E 1 452 IPR046965 GO:0016538|GO:0044772
Pumo5g02490 452 SUPERFAMILY Cyclin-like 184 319 IPR036915 -
Pumo5g02490 452 FunFam G2/mitotic-specific cyclin-1 310 434 - -
Pumo5g02490 452 MobiDBLite consensus disorder prediction 114 148 - -
Pumo5g02490 452 MobiDBLite consensus disorder prediction 99 153 - -
Pumo5g02490 452 Pfam Cyclin, N-terminal domain 195 319 IPR006671 -
Pumo5g02490 452 MobiDBLite consensus disorder prediction 1 36 - -
Pumo5g02490 452 Gene3D - 209 320 - -
Pumo5g02490 452 Pfam Cyclin, C-terminal domain 322 438 IPR004367 -
Pumo5g02490 452 Gene3D - 195 434 - -
Pumo5g02490 452 SMART cyclin_7 229 313 IPR013763 -
Pumo5g02490 452 SMART cyclin_7 326 408 IPR013763 -
Pumo5g02490 452 SMART Cyclin_C_2 322 439 IPR004367 -
Pumo5g02490 452 SUPERFAMILY Cyclin-like 321 440 IPR036915 -
Pumo5g02490 452 CDD CYCLIN_AtCycB-like_rpt1 172 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02490 Pumo-Chr5 68896578 68899330 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02490 1 443 Core Cell Cycle Gene Families AT4G37490 54.230 5.14e-153 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02490 K21777 - gmx:547919 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02490 5 68896578 68899330 Pumo5g02490 5 68896578 68899330 ECH