Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02489 ATGCCTTCGAGTTCGAATTCAAAGCAGAAAAAGAAGCAATCGAAGTTGCAGCAGCACTCATCATTATCCTCCAATGCCACCACGCCTTCCAAAACGCACCAACCTTCCGAACTCACCTCCTTATGCGAAGAAGCTTCTCGAAGGTTCCCTTCTCTCATCGCTAAATCCGCGTTCCTCGCCGAACTCACCCATGTCGACGACACCGTTCCCGTTTCTAACAGAATTTGGCTCTCCGCTCCTTCCATGCTCTCCCTCTCTCTCTCCCCCGCTTCCACTGTCTCGGTGTCTATTCCATCATCTCCAGAGAAAAGTTCGCAATTGCATAGCTTTCCCCTCGCTTCGTTAGCTAATGAATGTGACAAATTCTATGGATTGGAAAGTAGCAAGGCGTTCGATGATCATGCGGGAAACTACTTTGTGCTTGCAACAGTGTTTCCTTCTAGTAAGGTTTTGAAGGATGGAGTACGCCTGTCTTCAAACCTTTATTATACCATGGGATGTCCTCCTCTGGGCACAAGTGTGTTTGTTCATCCAATACAGAAAAGTCTTGCGAATGGGAGCAGCAATCAACAGCATTCTACAGAAAATAATTGTCTACCTATATATAATTGCAAGGAATTGTATCTTCAGTTGGTTCCTTCTAAGAATGGGCTGCCATTGAAATTTAATAACTTTCCCTCATTGGACGTGTCTAAGGTGAAATCCCGTGTCCAATCTGAGAATGATATTGTTGCATCTCCTGCAACACCTTCTTATGGATCAAAGTTTTCTAATGCTAGTGGGCTGTCTTCTCCACTATTTGATGATTCAGTGTCTAGTGTGCCAAATCAGAATAGTCAATCGCTGAATTCATTTGATGTTAGCTTAGCATTAGGGGATGAAAGTTCTAACAAATTACTACTGACAGGTGCAAAACCATGGTTATATTCTCGCTCTTTACTTCTAGGGAATCTTGTCAATGTCCCAATGTTATCAGAGTTGTGCTTTTTCCAAGTGATAGGAGCTAAGAAGCAGCCAGTTACCAAATCTGATCATTATCCATCAAATGGAAACAGTGATTTATATCCTGAGGATTCTGATATAGCAGATACTGTAAATCAGGCTTTCACTGTAAATGATGAAACAAAGGTATTTTTATCTCTGCCATCAAATGCTGCACCTGAAGAGCCAATTCAAAGGGATATACCTTGTGTGAAACTAGAACACAAAGTTGCTAATGCTAGCTTACATGATAAAATCTCTAAATTGGGTGGTCTATCCAAAGAATATACACTTCTGAAGGACATAATTTCTTCGTCAGTGAATGATGCTTTATCAAGTTTTGGTTTAAGAACTACAAGAGGTGTCCTTCTTCATGGTCCACCTGGTACAGGAAAGACTTCCCTGGCTCAATTATGTGCTCATGATGTTGGAGTCAAATTTTTCCCAATAAATGGACCTGAAATTGTTACCCAATATTATGGGGAAAGTGAGCAACAATTGCATGAAGTATTTGATTCAGCCATTCAAGCTGCACCTGCTGTGGTATTCATTGATGAATTAGATGCAATTGCCCCTGCAAGGAAAGATGGAGGTGAAGAGCTATCTCAAAGATTGGTTGCAACTTTATTGAATCTGATGGATGGAATTAGTAGAACTGAAGGGTTACTTGTAATTGCCGCCACTAACCGGCCTGACCATATTGAGCCAGCTCTCAGACGACCGGGAAGATTTGACAAGGAAATTGAAATTGGTGTGCCATCCCCCAAACAACGTTCAGATATTTTGCTCACTCTTCTCAGTGAAATGGATCACTCTCTCTCTGAGTTACAAATTGAACACCTTGCCACAGTCACTCATGGTTTTGTGGGTGCTGATCTAGCTGCACTTTGCAATGAGGCAGCGTTGATTTGTCTACGACGTTATGCTAATTTTAAGAAGACTTATGATTCTTGTTCTGATTATATAACAGAGCAACCCACTCTGAAGAATGGTGCAACAAACTCGACAGATCATTCAGGTGATGCAACTTCATCTGTTTCTGATAAGTCAGTGGCTTCCAGTCGTGTATTACCTTCCTGCATGATGGGAATGACTTCTGAAACTATGGAAATAATTCGTGATAGTGGTGAAGAAGAGCAGATTTTGAAAGTAAGCTTTGAAGATTTTCAGAAGGCTAGGATGAAAATAAGACCTAGTGCCATGAGAGAGGTAATCCTTGAGGTTCCAAAGGTTAATTGGGAAGATGTTGGCGGTCAAAAGGAGGTCAAAGCTCAATTGATGGAAGCAGTTGAATGGCCACAAAAACACCATGATGCATTCAATCGTATTGGGACTCACCCTCCTACAGGTGTATTGATGTTTGGGCCTCCAGGTTGTAGTAAAACCCTCATGGCACGTGCAGTTGCTTCTGAAGCAGGGCTGAACTTTCTAGCAGTTAAGGGTCCTGAACTCTTCAGCAAATGGGTTGGTGAATCTGAGAAGGCTGTCAGATCATTATTTGCAAAAGCAAGGGCCAATGCCCCATCAATAGTATTTTTTGATGAAATAGACAGTCTTGCTGTAACTCGTGGGAAGGAAAGTGATGGTGTTTCAGTGTCAGATAGGGTCATGAGTCAACTTCTTGTTGAGTTGGATGGTCTGCATCAAAGAGTTAATGTCACTGTCATAGCTGCTACAAATAGGCCAGACAAGATTGACCCTGCCCTTTTAAGGCCAGGACGCTTTGATCGTCTGCTATATGTTGGACCTCCAAATGAGGTGGACAGGGAAGAGATATTTCGCATTCATCTGCGTAAAATCCCATGTGGTTCTGATGTTAGCCTTAAAGAACTAGCTCGACTCTCAGATGGTTGTACTGGGGCTGACATATCATTGATATGTCGAGAGGCAGCTGTTGCAGCAATTGAGGAGAGCCTTGATGCTTCAGTTATAACAATGAAGCATTTAAAGATGGCAATCAAACAGATCCAGCCATCAGAAGTTCACTCCTACCAAAAGTTGTCAACAAAATTTCAAAGGGCCGTCCACTGCTGTGATATAAAGGATGAATCCAATCATATGCAGTGCGACAGTAGAACTACTCAATTCAACATTTGGAAGTTCATAAAATCTTGCACATTGTTCCTCTATCAGATTCCAGTTGTCATCTTTAATTTGAGAACTGCTCGAAGTAGTTAA 3159 0.4191 MPSSSNSKQKKKQSKLQQHSSLSSNATTPSKTHQPSELTSLCEEASRRFPSLIAKSAFLAELTHVDDTVPVSNRIWLSAPSMLSLSLSPASTVSVSIPSSPEKSSQLHSFPLASLANECDKFYGLESSKAFDDHAGNYFVLATVFPSSKVLKDGVRLSSNLYYTMGCPPLGTSVFVHPIQKSLANGSSNQQHSTENNCLPIYNCKELYLQLVPSKNGLPLKFNNFPSLDVSKVKSRVQSENDIVASPATPSYGSKFSNASGLSSPLFDDSVSSVPNQNSQSLNSFDVSLALGDESSNKLLLTGAKPWLYSRSLLLGNLVNVPMLSELCFFQVIGAKKQPVTKSDHYPSNGNSDLYPEDSDIADTVNQAFTVNDETKVFLSLPSNAAPEEPIQRDIPCVKLEHKVANASLHDKISKLGGLSKEYTLLKDIISSSVNDALSSFGLRTTRGVLLHGPPGTGKTSLAQLCAHDVGVKFFPINGPEIVTQYYGESEQQLHEVFDSAIQAAPAVVFIDELDAIAPARKDGGEELSQRLVATLLNLMDGISRTEGLLVIAATNRPDHIEPALRRPGRFDKEIEIGVPSPKQRSDILLTLLSEMDHSLSELQIEHLATVTHGFVGADLAALCNEAALICLRRYANFKKTYDSCSDYITEQPTLKNGATNSTDHSGDATSSVSDKSVASSRVLPSCMMGMTSETMEIIRDSGEEEQILKVSFEDFQKARMKIRPSAMREVILEVPKVNWEDVGGQKEVKAQLMEAVEWPQKHHDAFNRIGTHPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDSLAVTRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNEVDREEIFRIHLRKIPCGSDVSLKELARLSDGCTGADISLICREAAVAAIEESLDASVITMKHLKMAIKQIQPSEVHSYQKLSTKFQRAVHCCDIKDESNHMQCDSRTTQFNIWKFIKSCTLFLYQIPVVIFNLRTARSS 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02489 1052 Gene3D - 739 986 IPR027417 -
Pumo5g02489 1052 FunFam calmodulin-interacting protein 111 isoform X1 735 910 - -
Pumo5g02489 1052 FunFam Calmodulin-interacting protein 111 580 738 - -
Pumo5g02489 1052 SMART AAA_5 445 581 IPR003593 GO:0016887
Pumo5g02489 1052 SMART AAA_5 774 912 IPR003593 GO:0016887
Pumo5g02489 1052 ProSitePatterns AAA-protein family signature. 880 898 IPR003960 GO:0005524|GO:0016887
Pumo5g02489 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 736 987 IPR027417 -
Pumo5g02489 1052 CDD RecA-like_CDC48_NLV2_r1-like 415 577 - -
Pumo5g02489 1052 Gene3D - 911 981 - -
Pumo5g02489 1052 MobiDBLite consensus disorder prediction 654 675 - -
Pumo5g02489 1052 Pfam ATPase family associated with various cellular activities (AAA) 778 909 IPR003959 GO:0005524|GO:0016887
Pumo5g02489 1052 Pfam ATPase family associated with various cellular activities (AAA) 449 578 IPR003959 GO:0005524|GO:0016887
Pumo5g02489 1052 PANTHER AAA-FAMILY ATPASE 67 999 - -
Pumo5g02489 1052 FunFam spermatogenesis-associated protein 5-like protein 1 911 994 - -
Pumo5g02489 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 637 IPR027417 -
Pumo5g02489 1052 FunFam Putative vesicular transport protein (CDC48) 400 578 - -
Pumo5g02489 1052 Pfam AAA+ lid domain 604 635 IPR041569 -
Pumo5g02489 1052 Pfam AAA+ lid domain 932 977 IPR041569 -
Pumo5g02489 1052 Gene3D - 581 738 - -
Pumo5g02489 1052 CDD RecA-like_CDC48_r2-like 749 908 - -
Pumo5g02489 1052 Gene3D - 399 580 IPR027417 -
Pumo5g02489 1052 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02489 Pumo-Chr5 68881991 68890261 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02489 10 1038 Calmodulin-binding Proteins AT3G56690 55.295 0.0 1023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02489 - - gmx:100788600 1852.03