Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02488 ATGAGGGAAGAGGATTCGAATTGGTTTTCGCGATGGGAAGAGGAGCTTCCATCGCCAGAAGAACTCATGCCTCTATCACAAACCCTAATCACACCCGATCTAGCCATGGCCTTCGACATCAGAAACCCCCACACCACCACCAACCCAAACGCCACTTCCCAACAACAACCACCGCAGCAACAACAACAACAACCTTCAAACCCTTCCTCGCTCCCCAACCCGCAACAACAACCCACCTCCGCCGAGTTCGCCGACTCCGGCGAGCTCGGCTCCGGCACCGCCGGCGAGGAGCCGGCAAGAACCCTCAAGCGGCCACGCCTCGTGTGGACCCCACAGCTCCATAAGCGCTTCGTCGACGCCGTCGCTCACCTCGGCATCAAAAACGCCGTTCCCAAGACCATAATGCAGCTCATGAGCGTCGACGGCTTGACCCGCGAAAACGTCGCCAGCCACTTGCAGAAGTACCGTCTCTACCTCAAGCGCATGCAGGGGATTTCCGCCGCCGGGGCCGGCGGGCCCGGCGGCGGCGCCTCCGGCGCTGTGGCCGACCCCGCCACGGACCACTTGTTCGCGAGCTCGCCGGTGCCGGCGCATTTCTTGCACCCGGCCGCGAGGCCGAATTCGGACCACTTCCTGCCGTTCGTGCCCGTGCCGGCGCTCCACCACCACCAGCAGCAGCAGCAGCAGCTGGCGGCGGCGGCGCAGTACCACCGGCAGGTGGGGCATTTCGGGTCGCCGCCGAACGGGCACTTTGAGAATCCGTTCATGTCTAGGCCGAATCTTCAGAGGATGGGTGGTGGTGGTGGTGGTGGTCTTGTGCACAACCACCACCCTGTGAGTGGTTATGTGGAGGACATGGAGTCTGGTAATGCTGCCTCTGGAGGTAGAAAGGTTCTTACTCTGTTTCCAACTGGAGATGATTGA 924 0.618 MREEDSNWFSRWEEELPSPEELMPLSQTLITPDLAMAFDIRNPHTTTNPNATSQQQPPQQQQQQPSNPSSLPNPQQQPTSAEFADSGELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISAAGAGGPGGGASGAVADPATDHLFASSPVPAHFLHPAARPNSDHFLPFVPVPALHHHQQQQQQLAAAAQYHRQVGHFGSPPNGHFENPFMSRPNLQRMGGGGGGGLVHNHHPVSGYVEDMESGNAASGGRKVLTLFPTGDD 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02488 307 Gene3D - 101 163 - -
Pumo5g02488 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 109 160 IPR017930 -
Pumo5g02488 307 NCBIfam myb-like DNA-binding domain, SHAQKYF class 105 157 IPR006447 GO:0003677
Pumo5g02488 307 MobiDBLite consensus disorder prediction 1 18 - -
Pumo5g02488 307 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 266 IPR044841 GO:0003700|GO:0006355
Pumo5g02488 307 MobiDBLite consensus disorder prediction 41 86 - -
Pumo5g02488 307 MobiDBLite consensus disorder prediction 1 103 - -
Pumo5g02488 307 SUPERFAMILY Homeodomain-like 101 161 IPR009057 -
Pumo5g02488 307 MobiDBLite consensus disorder prediction 287 307 - -
Pumo5g02488 307 FunFam Two-component response regulator 100 163 - -
Pumo5g02488 307 Pfam Myb-like DNA-binding domain 108 156 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02488 Pumo-Chr5 68878444 68879367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02488 1 307 G2-like Transcription Factor Family AT3G10760 58.621 9.14e-99 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo5g02488 Myb_DNA-binding 2.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02488 - - gmx:100815363 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02488 5 68878444 68879367 Pumo5g02488 5 68878444 68879367 ECH