Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02478 ATGTACCCTCTTGGTGATTTGAAGAAGCATTACGGGTTTGAGATGGTTCTTCTTGACACAAGTGGTTCCAAAATCCAGGCTACAATAAGGAAACCTATGCATAGAAAGTTTAATCGTTGTGTTGAAGAGGGACGTGTATATGAGATGAACTATTTTGGTGTCATCCCGAATTCTGGATCTTATAGGGCTACAAGGCACGATTACAGGCTTTTGTTTCATGGAAGGACTACTGTCATTCCCATTGAGGATGGAACCATCCCTATGAATAATTTGTCAATTATTGATTCTCTTCAAGTCAATATGACAAATGGCGTTTCTGAATTTTTGATTGATGTTATGGGTATTTTGACTGCTGTTTCTGAAGAGAAAACTTCTGTTAAGGATGGCAAAACAACTCGACTTATTCAGTTAGAGTTAGCTGATGGCAGGGGCAAAATTCAATGTGCTCTTTTTGGTAAGTATGTTGATACTTTGAATGAGTTGTTATCTGCTGGTGGTAGTGAGTTACCAATGTTGGTAATTCAATTTGCACAAGTTAAAGAATATAAAGGTAGATGTATTTCTAAGTATCAATATTTTTCAAAATTTTGA 591 0.3621 MYPLGDLKKHYGFEMVLLDTSGSKIQATIRKPMHRKFNRCVEEGRVYEMNYFGVIPNSGSYRATRHDYRLLFHGRTTVIPIEDGTIPMNNLSIIDSLQVNMTNGVSEFLIDVMGILTAVSEEKTSVKDGKTTRLIQLELADGRGKIQCALFGKYVDTLNELLSAGGSELPMLVIQFAQVKEYKGRCISKYQYFSKF 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02478 196 SUPERFAMILY Nucleic acid-binding proteins 101 188 IPR012340 -
Pumo5g02478 196 CDD RPA1_DBD_A_like 8 78 - -
Pumo5g02478 196 SUPERFAMILY Nucleic acid-binding proteins 11 83 IPR012340 -
Pumo5g02478 196 CDD RPA1_DBD_B_like 111 196 - -
Pumo5g02478 196 Gene3D - 5 84 IPR012340 -
Pumo5g02478 196 Pfam Domain of unknown function DUF223 14 81 IPR003871 -
Pumo5g02478 196 Gene3D - 86 196 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02478 Pumo-Chr5 68769696 68777016 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02478 13 193 Core DNA Replication Machinery Family AT2G06510 25.521 6.03e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02478 - - lja:Lj1g3v2095720.1 162.54