Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02474 ATGTCAATGGCACTCTCTCAGCTAAGCCACCCTCTGGAAAATGAACTGAAAGCTGAAGACTCAGAATTCCCTCTGAAGGAAATTGGAAATGAAGGTCTCACAAAACGGATTCTCAGAAAAGGAGTCACTTGGCAAACTCCATTCTCTGGAGATGAAGTGAAAGTTCATTTCAGAGGACAAGTTGAAAATGGAGCATCTCTTGAATCCAGTTACGATAAAGGGTCCCCGTTTCGTTTTAAACTAGGCCAATGTGAAGTTATCAAAGGTTGGGATGAAGGAGTTGCCACCATGAAGAAAGGGGAGAGAGCAATCTTCAAAATACCACCTAACTTGGCATATGGGGAAACAGGGTCTCCTCCATTGATTCCTCCCAATGCAACTCTCGTTTTTGACATTGAAATGCTGTCTTGGAGTACCATAAGGGATTTGACTGGCGATGGAGGAATCAAGAAAAAGATAATCCGGGAGGGAGAAGGATGGGCAACTCCCAGAGAAGCTGATGAGGTGCTAGTGAAATATGAAGCCAGACTAGAGAATGGGATGCTTGTCTCCAAGTCTGATCAGGGAGTGGAGTTTAATGTAAGTGATGGTTATCTATGTCCTGCTATGAGTATAGCAGTAAAGACAATGAGAAAGGGCGAGGTAGCAGAACTAGCTATGAGATTCTTCTACGGGCTCAGTCAAAATTCAAATAGAACCACTGAGCTAGATGGTGTTCTTCCACCAGATTCTAATTTAACTAGCATCAAGCTTGAGCTGGTATCATGGAAGATTGTTACTGATGTCACAGGAGATAAGAAGATACTGAAAAAAATTAACAAAGTGGGTGAGGGGTTTGATCGCCCTAATGAGGGATCCCAAGTGAAAGTGATATATTTGTGTAAAGGGGAAGATGGTGCGATTATTGAGAGGAAAGGATCAGAGGAAGAACCTTTTGAGTTCACAACTCAGGAAGAACAGGTACCCGAGGGTCTAGAAAGAGCAATAATGACAATGAAAAAAGCAGAACAAGCTCTGGTGACTGTGGATGCTGAATATTTGTGCCACTACAATAATTCACAGGGAAACGCAGCCAATAATAAAGTCCTTTATTATGAAGTTGAGTTGGTTGATTTCGTTAAGGAAAAACCATTTTGGAAAATGGATACACAAGAGAAAATAGAAGCTTGTGAGAGGAAGAAGCATGATGGAAATCTGCTGTTCAAGGCTGAAAATTTCAGGCGCGCATCCAAGAAATATGTAAAGGCTGTAAAATACATTGAGTTTGATCACTCATTCAGTGAAGATGAGAAGCGTCGTGCTAATACATTACATTTATCCTGTAATTTGAACAATGCTGCCTGTAAACTTAAATTGGGGGAGTACATTGAAGCTTCAAGACTATGCACAAAGGTCCTAGAACAAGACCCCTTAAATATAAAGGCTCTTTACAGAAGATGCCAAGCATACTTGAAAACATCAGACTTGGAGAAAGCTGAGGCTGACATTAAAAGAGCTTTGATTATTGATCCAAATAACAGAGACATTAAACTTGAGTACAAAGAGCTGAAACTTAAGCAAAAGGAATACAGTAGACATGAAGTTGACATCTTCAGCACAATGCTTTCAAGGATGAACTAG 1620 0.4068 MSMALSQLSHPLENELKAEDSEFPLKEIGNEGLTKRILRKGVTWQTPFSGDEVKVHFRGQVENGASLESSYDKGSPFRFKLGQCEVIKGWDEGVATMKKGERAIFKIPPNLAYGETGSPPLIPPNATLVFDIEMLSWSTIRDLTGDGGIKKKIIREGEGWATPREADEVLVKYEARLENGMLVSKSDQGVEFNVSDGYLCPAMSIAVKTMRKGEVAELAMRFFYGLSQNSNRTTELDGVLPPDSNLTSIKLELVSWKIVTDVTGDKKILKKINKVGEGFDRPNEGSQVKVIYLCKGEDGAIIERKGSEEEPFEFTTQEEQVPEGLERAIMTMKKAEQALVTVDAEYLCHYNNSQGNAANNKVLYYEVELVDFVKEKPFWKMDTQEKIEACERKKHDGNLLFKAENFRRASKKYVKAVKYIEFDHSFSEDEKRRANTLHLSCNLNNAACKLKLGEYIEASRLCTKVLEQDPLNIKALYRRCQAYLKTSDLEKAEADIKRALIIDPNNRDIKLEYKELKLKQKEYSRHEVDIFSTMLSRMN 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02474 539 Gene3D - 140 257 IPR046357 GO:0003755
Pumo5g02474 539 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 166 246 IPR001179 GO:0003755
Pumo5g02474 539 FunFam Peptidylprolyl isomerase 5 139 - -
Pumo5g02474 539 SUPERFAMILY FKBP-like 143 229 - -
Pumo5g02474 539 Pfam Tetratricopeptide repeat 474 506 IPR001440 GO:0005515
Pumo5g02474 539 SUPERFAMILY FKBP-like 254 392 - -
Pumo5g02474 539 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 281 370 IPR001179 GO:0003755
Pumo5g02474 539 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 47 135 IPR001179 GO:0003755
Pumo5g02474 539 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 162 243 IPR001179 GO:0003755
Pumo5g02474 539 Gene3D - 258 375 IPR046357 GO:0003755
Pumo5g02474 539 SMART tpr_5 439 472 IPR019734 GO:0005515
Pumo5g02474 539 SMART tpr_5 473 506 IPR019734 GO:0005515
Pumo5g02474 539 SMART tpr_5 390 423 IPR019734 GO:0005515
Pumo5g02474 539 SUPERFAMILY TPR-like 380 530 IPR011990 GO:0005515
Pumo5g02474 539 FunFam Peptidylprolyl isomerase 378 533 - -
Pumo5g02474 539 Gene3D Tetratricopeptide repeat domain 376 533 IPR011990 GO:0005515
Pumo5g02474 539 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 50 138 IPR001179 GO:0003755
Pumo5g02474 539 ProSiteProfiles TPR repeat profile. 473 506 IPR019734 GO:0005515
Pumo5g02474 539 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 285 373 IPR001179 GO:0003755
Pumo5g02474 539 SUPERFAMILY FKBP-like 28 138 - -
Pumo5g02474 539 Gene3D - 6 139 IPR046357 GO:0003755
Pumo5g02474 539 Coils Coil 325 345 - -
Pumo5g02474 539 FunFam Peptidylprolyl isomerase 141 257 - -
Pumo5g02474 539 PANTHER PEPTIDYLPROLYL ISOMERASE 13 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02474 Pumo-Chr5 68692461 68696753 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02474 27 538 Calmodulin-binding Proteins AT5G48570 54.721 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02474 - - gmx:100785412 1001.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02474 5 68692461 68696753 Pumo5g02474 5 68692461 68696753 ECH