Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02453 ATGGACCAACAGCAGTGCCACGTCAGCAGCGGAACTAACAACAATCCCCTGCTCCGCTGCCCCACGGTGCGCGCCCTCCCCTTCGCGCGCCTCGTCGCCGCCTCTCGCCGCCGCCTCTTCCTCTCCGACTGCGCTGACCGCCGATCCGACGACGACGGAGACGGTGACGGCGACGCCGCCGGCGAGTGCGTTTACTCGCGGGCGGTGCTCGTGCTGGACATGGTGTGGAACCTGGCCTTCGTGGTGGTGGCCGCCGGCGTGCTCCTTTCGACGCTCCAAGAGCGGCCGTCGACGCCGCTGAGACTGTGGCTCTGCGGCTACGCCTTCGAGTGCGTCCTTCACATGGCCTTCGTCTACTTCGAGTTCCGAACCGGAATTCGCGATTCCTTCTCTCACACTACCTATAGCATTGTGAAGAAGCTAGAGCCCATGAACACTCTGGCATCATCTGTTTGGTGGGTGTTTGGATTTTATTGGATTGTTGTGGGTGGCCAAGCACTTTTGGAAGATTCTCCACGTCTCTACTGGTTAACAGTGGTCTTTCTAGCCTTTGATGTATTTTTTATTATCTTTTGCATTGGGATTGCATGTATAGTTTTCTTTGCTCTCTTCTGCATTATCCCAATAATAGCACTAGCTTATGCGATGAGAATCAGAGAAGGCGCATCAGAAGACGATATCAGGTCACTTCCTATGTATAGGTTTAGTCAGTCAAATTCATTGGTGATGGTTGATGACAACAAGAAGCAACTTGTTAAAGGAAGAGTAGATTCATGCAATGGAAGCCTTTTGAGTGAACTTTCTCTCCATCCAGATGATTCTGAATGCTGTATCTGCCTATGTCCATATGTTGAAGGAGCAGAACTGTATCGCCTTCCCTGTACCCACCATTTTCATTGTGGATGCATCGGCCGTTGGCTTCGTACAAAAGCAACCTGCCCACTCTGCAAATTTAATATCCTTAGAGGTGATACATTGGTTTGA 984 0.5152 MDQQQCHVSSGTNNNPLLRCPTVRALPFARLVAASRRRLFLSDCADRRSDDDGDGDGDAAGECVYSRAVLVLDMVWNLAFVVVAAGVLLSTLQERPSTPLRLWLCGYAFECVLHMAFVYFEFRTGIRDSFSHTTYSIVKKLEPMNTLASSVWWVFGFYWIVVGGQALLEDSPRLYWLTVVFLAFDVFFIIFCIGIACIVFFALFCIIPIIALAYAMRIREGASEDDIRSLPMYRFSQSNSLVMVDDNKKQLVKGRVDSCNGSLLSELSLHPDDSECCICLCPYVEGAELYRLPCTHHFHCGCIGRWLRTKATCPLCKFNILRGDTLV 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02453 327 ProSiteProfiles Zinc finger RING-type profile. 276 317 IPR001841 -
Pumo5g02453 327 PANTHER TARGET OF ERK KINASE MPK-1 62 321 - -
Pumo5g02453 327 Pfam Ring finger domain 275 317 IPR001841 -
Pumo5g02453 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 323 IPR013083 -
Pumo5g02453 327 SMART ring_2 276 316 IPR001841 -
Pumo5g02453 327 SUPERFAMILY RING/U-box 269 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02453 Pumo-Chr5 67663409 67667638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02453 65 324 C3H Transcription Factor Family AT1G68070 46.953 2.35e-87 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02453 - - gmx:100806994 583.948