Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02437 ATGGGGAGGAAGCGAAAGGTAGCACCCAAATCTTCTCAATCCGCCGAGCCCCCACTCAAGGTCCACCAACCAGAACCCGAAAATGCCCCTCAAGAATACGAAGAGGTCGAAGAAGAGGAAGTTGAGGAAGAAGAAGAGGTAGAGGAGGAAGTCGAAGAGGAAGAAGAAGAAGAAGAGGACGAAGAGGAGGAAGAAGAAGACAACGACGACAAAGAACAACAACAAGATGAAGACGACGACCCGATCTCCAAGCTTCTGGAACCGTTAAGCAAGGACCAGATCTTGAACCTTCTCTGCGAGGCGGCGGCCAAGCACCGCGACGTGGCCGAGCGGATCCGCAAGGCCGCCGACGAGGATCCGGTGCACCGGAAAATATTCGTCCACGGGCTGGGGTGGGACACCACCGCCGGAACCCTAATCAGCGCGTTCCGGCAGTACGGCGAGATCGAGGACTGCAAGGCCGTCACCGACAAGGTCTCCGGCAAGTCCAAGGGCTACGGCTTCATCCTCTTCAAGACGCGCCGCGGCGCGCGCAACGCGCTCAAGCAGCCGCAGAAGAAGATCGGCAACCGCATGACGGCGTGCCAGCTGGCGTCCATCGGACCGGTCAGCAACAACAGCCAGCCGCAGGCACCGTCTGCGACGACGGTGCCGCAGGCGCCGTCGTCGTCTTCGGTTTCGGAGTACACGCAGAGGAAGATCTACGTGAGCAACGTCGGCGCGGATCTCGATCCGCAGAAGCTTCTAGCGTTTTTCTCGCGGTTCGGGGAGATTGAGGAAGGGCCGTTGGGGCTTGACAAGGTTACAGGAAAACCTAAGGGGTTTTGTTTGTTTGTTTACAGGAGTGGTGAGAGTGCGAGGAGAGCGTTGGAGGAGCCTCATAAGGATTTCGAAGGGCACATTTTGCATTGCCAGAAGGCGATTGATGGGCCCAAGCCCGGGAAGTTGCAGCAGCAGCAGCAGCATGGGAATGTGAATGCTCAGGCCCAGCGGACCCAGTTTCAGAGGAATGATAATGTTAATGCCAATGCTGCTACTGGTTATGTTGGTGGTGGTGCTGCGGCGGCGCAGCCGGGACACTTGATGGCCCCGGCCGGGCCGGGGATTGGGTTTAATCAGTCGGCTGCTGCGCAGGCCACACTGAATCCGGCAATGGCGCAGGCGTTGACGGCCCTGCTGGCGTCGCAGGGGACGTTGGGGCTGACAAATTTGTTGGGGAGTATTGGAACGAGTGCTGCGGTGAACCCTGGTGTGCCTGCTGCCGGGGCTGCGGTGCAGGGTGGTTACAGTGCTCAGCCGAATATAAGTCCCGGTGTTGTTGGAGGATATGGGAATCAGGTGGGGTTGCAGGTGGCGTATCCAAATCCGAATCAGCAGATAGGACAGGGTGGCTCTGGAAGAGGCCAATATGGTGGTGGATCTGCGCCCTACATGGGGCACTAG 1443 0.5849 MGRKRKVAPKSSQSAEPPLKVHQPEPENAPQEYEEVEEEEVEEEEEVEEEVEEEEEEEEDEEEEEEDNDDKEQQQDEDDDPISKLLEPLSKDQILNLLCEAAAKHRDVAERIRKAADEDPVHRKIFVHGLGWDTTAGTLISAFRQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGARNALKQPQKKIGNRMTACQLASIGPVSNNSQPQAPSATTVPQAPSSSSVSEYTQRKIYVSNVGADLDPQKLLAFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYRSGESARRALEEPHKDFEGHILHCQKAIDGPKPGKLQQQQQHGNVNAQAQRTQFQRNDNVNANAATGYVGGGAAAAQPGHLMAPAGPGIGFNQSAAAQATLNPAMAQALTALLASQGTLGLTNLLGSIGTSAAVNPGVPAAGAAVQGGYSAQPNISPGVVGGYGNQVGLQVAYPNPNQQIGQGGSGRGQYGGGSAPYMGH 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02437 480 MobiDBLite consensus disorder prediction 456 480 - -
Pumo5g02437 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 191 IPR000504 GO:0003723
Pumo5g02437 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 301 IPR000504 GO:0003723
Pumo5g02437 480 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 18 324 - -
Pumo5g02437 480 SMART rrm1_1 233 305 IPR000504 GO:0003723
Pumo5g02437 480 SMART rrm1_1 124 196 IPR000504 GO:0003723
Pumo5g02437 480 Gene3D - 221 342 IPR012677 -
Pumo5g02437 480 MobiDBLite consensus disorder prediction 30 76 - -
Pumo5g02437 480 MobiDBLite consensus disorder prediction 1 83 - -
Pumo5g02437 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 200 IPR000504 GO:0003723
Pumo5g02437 480 MobiDBLite consensus disorder prediction 201 225 - -
Pumo5g02437 480 SUPERFAMILY RNA-binding domain, RBD 218 324 IPR035979 GO:0003676
Pumo5g02437 480 FunFam UBP1-associated protein 2A 219 349 - -
Pumo5g02437 480 Gene3D - 25 205 IPR012677 -
Pumo5g02437 480 FunFam UBP1-associated protein 2A 116 200 - -
Pumo5g02437 480 Coils Coil 33 77 - -
Pumo5g02437 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 232 321 IPR000504 GO:0003723
Pumo5g02437 480 SUPERFAMILY RNA-binding domain, RBD 122 204 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02437 Pumo-Chr5 67411083 67416426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02437 211 320 C2H2 Transcription Factor Family AT2G19380 32.727 3.25e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02437 K12741 - gmx:100784200 698.353