Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02435 ATGTATCACGCAAAGAAGTTTTCGCCGGCTAGCATGGTGCCGCATAAATCTCAAGGTGCTGATGAACAACTTGCAAATGCTGGGGTTTTGAGTGGATCTGCTGTAAAAAATGCTGCACCTGCTGGGGGAAGTGGGAAGCAACGTTTAAGGTGGACATCTGATCTTCATGACCGTTTTGTGGATGCCATTACACAACTTGGTGGACCAGATAGAGCAACACCAAAAGGTGTTCTTAGAGTGATGGGTGTTCCTGGACTGACCATTTATCATGTTAAAAGCCATTTACAGAAATATCGCCTTGCAAAATACTTGCCTGAATCACCAGCTGATGGTAAAGACTCTAAAGATGAGAAGAGGAATTCTGGAGACAGCATTTCTGGCGCAGATTCTTCCCCGGGAATGCCAATCAATGATGCCCTAAGAATGCAGATGGAGGTTCAGAAACGTCTGCATGAGCAGCTTGAGGTTCAAAAGCAATTACAAATGAGAATTGAAGCACAGGGTAAATACTTGCAAAAGATCATAGAGGAACAGCAGAAATTAGGTAGTACCTTGACAACCTCGGAAATACTCCCTTTGTCCCATGATAAGCAAAATCATACTCAGTCAGAGGCTTCTGGATCTAGTGATGCCCTTGCAAGCACTTTGTCTCCACATAAAAAACAGAGAATCGATGATGGTTCCAAGGACGGCTTCACTGCTTCCCAAGTAAGAAAGACTGCACAAAAGAATGACTGCAATGTTGGTCAGTTGGATCCAAACTTGTATGATGATGCTGGGTTTGGATTTGATTTGGAGGCAAAAAAAGATGAAGATAACGAGAGTGGACAGATACTTGTCGATGTTCAGGTTGCTATGGTCTAA 864 0.434 MYHAKKFSPASMVPHKSQGADEQLANAGVLSGSAVKNAAPAGGSGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGKDSKDEKRNSGDSISGADSSPGMPINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLTTSEILPLSHDKQNHTQSEASGSSDALASTLSPHKKQRIDDGSKDGFTASQVRKTAQKNDCNVGQLDPNLYDDAGFGFDLEAKKDEDNESGQILVDVQVAMV 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02435 287 Coils Coil 137 157 - -
Pumo5g02435 287 MobiDBLite consensus disorder prediction 105 136 - -
Pumo5g02435 287 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Pumo5g02435 287 MobiDBLite consensus disorder prediction 106 123 - -
Pumo5g02435 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Pumo5g02435 287 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 45 236 IPR044848 GO:0003700
Pumo5g02435 287 MobiDBLite consensus disorder prediction 197 216 - -
Pumo5g02435 287 FunFam Myb family transcription factor 45 103 - -
Pumo5g02435 287 Pfam Myb-like DNA-binding domain 49 99 IPR001005 -
Pumo5g02435 287 Gene3D - 45 104 - -
Pumo5g02435 287 MobiDBLite consensus disorder prediction 197 231 - -
Pumo5g02435 287 SUPERFAMILY Homeodomain-like 45 100 IPR009057 -
Pumo5g02435 287 Pfam MYB-CC type transfactor, LHEQLE motif 134 180 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02435 Pumo-Chr5 67391564 67395523 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02435 35 226 G2-like Transcription Factor Family AT3G13040 44.393 5.97e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo5g02435 Myb_DNA-binding 2.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02435 - - gmx:100783132 500.745