Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02433 ATGGCCGAGCCACAAGGTGGTGGTGGTAGTGATAGTGGTGGTGACAGTGGCACGTCTGGAAGCAGACGTAGAGGCACTGCTTCCAGGCGTGCCATGGCATCACAAACACAAGATGAGGCAATGGTGGGATCTTCAACCACAACACCATGTGGGGCTTGCAAGTTCTTGAGGAGGAAGTGCATTGGGCGATGCATCTTTGCACCCCACTTTGGTACTGACCAGGGTACAGCCAAGTTTGCAGCTATGCACAAGGTGTTTGGGGCTAGCAATGTGTCAAAGCTCTTGTCCAACATTCCGGTGAACCGCCGCCACAAAGCGGCGACAATCATATCTTATGAGGCTCAAGCAAGGTTGTCTGATCCGGTTTATGGTTGTGTCTCCACCATCCTTGCTTTGCAACAACAGGTGGCATCTTTGCAAGCAGAGCTAGCTATGTTGCAAACTCAGTTGATGAATAGCAAGTTTGCCTATGCAAGTGCTCTTCAGACCACACAACTACAAAAACCAAACATGAATGCAGCAACACTACAACCAGCATATTCCAACAATTCATGTGCTTCCACCAACCTTATGAACTTGAGCAACTTCAATAATAACCCTGGCTTTGACCTTGCAATGGACACAACACCCATCACATAG 639 0.4867 MAEPQGGGGSDSGGDSGTSGSRRRGTASRRAMASQTQDEAMVGSSTTTPCGACKFLRRKCIGRCIFAPHFGTDQGTAKFAAMHKVFGASNVSKLLSNIPVNRRHKAATIISYEAQARLSDPVYGCVSTILALQQQVASLQAELAMLQTQLMNSKFAYASALQTTQLQKPNMNAATLQPAYSNNSCASTNLMNLSNFNNNPGFDLAMDTTPIT 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02433 212 MobiDBLite consensus disorder prediction 1 45 - -
Pumo5g02433 212 Coils Coil 129 149 - -
Pumo5g02433 212 PANTHER LOB DOMAIN CONTAINING PROTEIN 45 187 - -
Pumo5g02433 212 Pfam Lateral organ boundaries (LOB) domain 49 147 IPR004883 -
Pumo5g02433 212 ProSiteProfiles LOB domain profile. 48 150 IPR004883 -
Pumo5g02433 212 MobiDBLite consensus disorder prediction 11 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02433 Pumo-Chr5 67373458 67375660 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02433 18 190 AS2 family AT3G03760 60.215 1.19e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo5g02433 LOB 4.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02433 - - gmx:100808548 313.153