Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02397 ATGGGAAGCAGAAAGGAAGAAGAGAGGAACGAAAAAATCATCAGAGGTCTCATGAAGCTTCCTCCCAATCGAAGATGCATAAACTGTAATAGTCTGGGTCCACAATATGTTTGTACGAATTTCTGGACCTTTGTTTGCATGACCTGCAGTGGAATACATCGTGAGTTTACCCATCGTGTGAAGTCTGTATCTATGGCAAAGTTCACTTCACAAGAAGTTGATGCTCTTCAAAATGGGGGTAACCAGGTTACAAGGGAAATATATTTGAAAAATTGGGACTTCCAAAGGCAGCGGTTGCCAGATAGCAGTAATGTTGATAAAATAAGAGAGTTTATAAGGAATGTATATGTGGATCGAAGATATGCTGCAGCAAAGTCTTCTGATAAGCCTCCAAGAGATGTGCAGAGTCCTAGAATCCATGAAGATGATACAAGGCGTGCCAGTTCCTATCACTCATATTCTCAAAGTCCTCCATATGATTACCAATATGAAGATCGACGATATGGAAAACAAGCAGCTGCACTGACCAGGAAGCCTGGTTCAGATAAAGTTCGCTACGAAGGAAAGATAAGTAGTATTATCTTTAGTCCTGGTCGCTTCAGCGATCATGCATATGATGACAGATTTGCAAATGAGGGATCTGGTCCAAGAATCTCTGACTTTTCTATGTCTAATGGTGGTGAGCAATTTAAAACTGATGTTCAGCATTTTGGTACCTGTTCAAGTGAAGATGTATGGTCTCATGCAATAAATACGTCTCTGGAAACAAACTCCAAGAGAGATGCTGATGGAATTCATCGTCCACAGAGAACTACTTCATTGGGATCAACAGACAGCAACCTGTCATCCTTAAGATCTTACAGTTCTGGTGGTTTAGTTGATTTTTTCTCAGAACCATTCCAAGCTTCTGGACCCCATCAAAATAAAGTGTCTTGTACTCCACAACCATCTGATCTGGGAAGTACTGTTAGTTCAGATCTTTCTGAGGCACCAGCGGCACCCAAACCATTCTCTTCATCTGCTTCATCTATTGACCTTTTCCAGTTACCAGCTGCACCCTCTCAGGCTTCATCAGTGGATCTGTTTCAGTCATCTGCTTTATCTGCAATTCCATCTTTCAATGAGCGTCAACCTGTGAAAACATCCCAACCCTCATCTGTTGACTTCTTTATGGATCTTTCTCAGCAGCCATCTGCTGCAACCTCAAATGAGAAGTCACTGGAGTTGTCTGTCCCTAAAAATGAAGGATGGGCAACATTTGATATGCCTCAGCACACAACATCTACTGCACAAGTAGAAATTCCAACAGCAGTGCCTTCAACTGCTGACTCCTTGCAGGAAAAATTTGATCCATTTTTGAACTTAAATGCAAATATGTTATGGCCATGTTCCGAAACTTCTAGTACTAGTGTTTTTTGTTTGGTTACATCTAATTTATGGCGTGATGGCACGTGGAATGGAGAAGAACAAGTTTCTGTTACGGCATCAAACTCTCAACCATGGAATGCATTTAAAGATTCTGCTACCTCTGTTCCTGTGGATGCCCTTAATCAAGGATCACAAATGCATGATCTTCCATCAACTGATGATCAGATTTTGGATTTAAGAGCTTCTGAGGGATCCAATAAAGGTGGTATGCAAGGCATTGCCCCTGTTGCTGGGTTTGATCATGATCTTTCATTGCATTTTGTTGGTGGCTCACAATGTCCTCCATCTGCATGTCCTCCGATGGGAGAGGTTCAGCCTAATGAAATCAACCATAAATCAACTAATCCATTTGATTATCCTTATGATTCAGATGTAGAACATAATAATACGTGTGAATTGCAATTCCTTGATGTCAGCTCTCTACAAGCTGCTCTGCCAGATTCCCAGCTACCACCCACCTTCCAAAGTGGTATTGCTGAACCATGGCTCCCTCAGAATACACTGAACCCTTATGTCTCCTCTGCAGGACAAGGTGGTTTGACATTCATGGCTGCACCACCACCAAGTTCTCAAATACTGAACATCCAGACGAATGGACCAGTTGCTTCTGTTGGGGGCAATCCCTTTGCATAG 2061 0.4216 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMAKFTSQEVDALQNGGNQVTREIYLKNWDFQRQRLPDSSNVDKIREFIRNVYVDRRYAAAKSSDKPPRDVQSPRIHEDDTRRASSYHSYSQSPPYDYQYEDRRYGKQAAALTRKPGSDKVRYEGKISSIIFSPGRFSDHAYDDRFANEGSGPRISDFSMSNGGEQFKTDVQHFGTCSSEDVWSHAINTSLETNSKRDADGIHRPQRTTSLGSTDSNLSSLRSYSSGGLVDFFSEPFQASGPHQNKVSCTPQPSDLGSTVSSDLSEAPAAPKPFSSSASSIDLFQLPAAPSQASSVDLFQSSALSAIPSFNERQPVKTSQPSSVDFFMDLSQQPSAATSNEKSLELSVPKNEGWATFDMPQHTTSTAQVEIPTAVPSTADSLQEKFDPFLNLNANMLWPCSETSSTSVFCLVTSNLWRDGTWNGEEQVSVTASNSQPWNAFKDSATSVPVDALNQGSQMHDLPSTDDQILDLRASEGSNKGGMQGIAPVAGFDHDLSLHFVGGSQCPPSACPPMGEVQPNEINHKSTNPFDYPYDSDVEHNNTCELQFLDVSSLQAALPDSQLPPTFQSGIAEPWLPQNTLNPYVSSAGQGGLTFMAAPPPSSQILNIQTNGPVASVGGNPFA 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02397 686 PANTHER ARFGAP/RECO-RELATED 1 686 IPR044820 GO:0005096
Pumo5g02397 686 MobiDBLite consensus disorder prediction 257 280 - -
Pumo5g02397 686 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Pumo5g02397 686 MobiDBLite consensus disorder prediction 304 328 - -
Pumo5g02397 686 MobiDBLite consensus disorder prediction 123 148 - -
Pumo5g02397 686 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Pumo5g02397 686 SUPERFAMILY ArfGap/RecO-like zinc finger 9 122 IPR037278 -
Pumo5g02397 686 MobiDBLite consensus disorder prediction 123 161 - -
Pumo5g02397 686 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Pumo5g02397 686 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Pumo5g02397 686 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Pumo5g02397 686 Gene3D Arf GTPase activating protein 2 134 IPR038508 -
Pumo5g02397 686 CDD ArfGap_AGFG 11 123 - -
Pumo5g02397 686 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Pumo5g02397 686 MobiDBLite consensus disorder prediction 304 336 - -
Pumo5g02397 686 Pfam Putative GTPase activating protein for Arf 12 124 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02397 Pumo-Chr5 66595479 66606179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02397 14 137 C2H2 Transcription Factor Family AT3G07940 32.090 9.41e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02397 K15044 - gmx:100817495 1177.93