Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02393 ATGGGGAGGCCTCCTTGCTGTGACAAAGTTGGCATCAAGAAAGGTCCATGGACACCTGAGGAGGATATCATCCTTGTCTCTTACATCCAAGAACATGGTCCTGGAAATTGGAGATCAGTGCCTACTAATACTGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACAAATTACCTCAGGCCAGGAATCAAGAGAGGGAACTTCACTCCACATGAGGAAGGAATGATAATTCATTTGCAAGCTCTACTGGGTAACAAATGGGCAGCCATAGCTTCCTATCTTCCACAAAGAACAGACAATGATATAAAGAATTATTGGAACACCCATCTAAAGAAGAAGCTGAAGAAATTTCAAGCACCCTTAGATCCCCACTCAGCACCAGACTCAACAACCAGTGGTCAGTTTCTACCAAAGAGCTTTAGTGACAGAAGAAGTTTAGACATCAGCAGCAACAACAACAATCATGCCTCATCCCTTAGGATTAGTCAGTCTCAGTCCTCCACAACATATGCCTCAAGCACTGAGAACATCTCAAGACTCTTGGAAGGTTGGATGAGAACTTCCCCAAAGCCACTCAAGGGATCCCAAGATGAAGATCAGCAGCTCCAAAGCATTAATGATGATGATGATAACAACAACTTTGAAGAAAGCACCAAGCTAGTGAAGTGTGCATCAGTGCCTGCTTTGAACCTTCATCTTCAGCACAAGAGAAACAAAGATGAGCAAGAGGGGGGTGTAGATATGGTCTCTCATGAAGAGTTTGATTCTATTTTGTCCTTTGAGAACCTAAACAATGCTGCTTGGGACAAGTCCACTTGTGATTCCATGCCAGAAAAGAGTTCTGAAGCTGCTGATCATCATGATATAGCTGCTCATGAGAGGAATGTTATTAGGCAAAATAAATCTGAGAACATTGGTGGTGCTCCTCCGTTGTCATTTCTTGAAAAATGGCTCTTGGATGAAAACGTTGGTCATCAAGTGGAGGAGATGATGGAGTTGTCTCCTATGTTCTAA 1020 0.4333 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQAPLDPHSAPDSTTSGQFLPKSFSDRRSLDISSNNNNHASSLRISQSQSSTTYASSTENISRLLEGWMRTSPKPLKGSQDEDQQLQSINDDDDNNNFEESTKLVKCASVPALNLHLQHKRNKDEQEGGVDMVSHEEFDSILSFENLNNAAWDKSTCDSMPEKSSEAADHHDIAAHERNVIRQNKSENIGGAPPLSFLEKWLLDENVGHQVEEMMELSPMF 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02393 339 CDD SANT 69 112 IPR001005 -
Pumo5g02393 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pumo5g02393 339 CDD SANT 16 61 IPR001005 -
Pumo5g02393 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pumo5g02393 339 MobiDBLite consensus disorder prediction 126 174 - -
Pumo5g02393 339 FunFam Transcription factor MYB60 68 136 - -
Pumo5g02393 339 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo5g02393 339 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pumo5g02393 339 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo5g02393 339 FunFam MYB-related transcription factor 13 66 - -
Pumo5g02393 339 SMART sant 66 114 IPR001005 -
Pumo5g02393 339 SMART sant 13 63 IPR001005 -
Pumo5g02393 339 Gene3D - 13 66 - -
Pumo5g02393 339 MobiDBLite consensus disorder prediction 189 216 - -
Pumo5g02393 339 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 217 - -
Pumo5g02393 339 MobiDBLite consensus disorder prediction 119 174 - -
Pumo5g02393 339 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo5g02393 339 Gene3D - 69 134 - -
Pumo5g02393 339 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02393 Pumo-Chr5 66566333 66568284 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02393 1 119 MYB Transcription Factor Family AT5G62470 89.916 1.34e-80 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo5g02393 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02393 K09422 - gmx:100817854 559.681