Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02385 ATGAGTAGTTCTTCACAGCACTTCATCAATGTTGGTGAAGGTAGCAGTAGAGACATGAGTTTCTTTCCTTCTTCTTCTTTTTATGTGGGTTCTTCATCAGCTCCTCCTTTGTCTATGGGACATGGAAATGGGGTAGAGGGTTCAAACCCTGAGATGGCTCTTCAGATTTTTGTCTCTCCAGTGTTTCAGCCCCAGGAGTGCAGGGGAACGAAGAGAGCCAGTGATGAAGGGGTTGAGAACAGGAGCTTGTGTTTGAAACTTGGTGATGAAGCAGAAGAAGCTAAGAGCTCTGCTTCAGGGAAAAATGGTCACACCAAGCTTTGTGCTAGAGGTCACTGGAGGCCAGCTGAAGATGAAAAACTCAAGGAGCTTGTTGCTCAATATGGTCCTCAAAATTGGAACTTGATTGCTGAGCATCTAGAAGGAAGATCAGGAAAAAGTTGTAGATTGAGGTGGTTTAACCAGCTAGATCCTAGGATCAACAGAAGGTCCTTTTCTGAGGAGGAAGAGGAGAGGCTTTTGACTGCTCACAGAATGTATGGTAACAAATGGGCCATGATTGCTAGACTCTTCCCAGGAAGGACAGATAATGCAGTGAAGAACCACTGGCATGTGATCATGGCTAGGAGGCAGAGGGAGCACTCTAGCAATGTGTATAGAAGGAGAAAACCGGTTATTAATAATGAAACCCTTCCAAAGGGTTTGAATCTGACTTTGTCTAACAATGCAGGGAGTGAGTCAACCATCTCAAGCACCCTTGATGAATCTGCCTCAACTTGCACTAACCTCTCCCTCACACCCTCCTCAGCCAAAGTAACAACCCCTCCTTTTGTACTCTTTGACCAACCTGGCCCATCTCAGAATCACCATGCCTTTGGATCATTAATGGGACAAGGTAGAAGGGATGTGAGTTTTAACAAGTTTTATGGTGGTTGGAAGGGGGTATCTGAACATGTGGGAAAGCTTATTATAGGTGTGGACCAGTCTAATTTTTCAGATGCAAATTCAGAAGTATCAGTATCTGAGTCAGTTGCTACCAATAGGTCCAATGTCTCAATTTCTGAGGAGAGTGAAACTGTTGTGGGTGATAAGATTAACATGCCATTCATTGATTTTCTTGGAGTAGGAGCTACTTAG 1137 0.4424 MSSSSQHFINVGEGSSRDMSFFPSSSFYVGSSSAPPLSMGHGNGVEGSNPEMALQIFVSPVFQPQECRGTKRASDEGVENRSLCLKLGDEAEEAKSSASGKNGHTKLCARGHWRPAEDEKLKELVAQYGPQNWNLIAEHLEGRSGKSCRLRWFNQLDPRINRRSFSEEEEERLLTAHRMYGNKWAMIARLFPGRTDNAVKNHWHVIMARRQREHSSNVYRRRKPVINNETLPKGLNLTLSNNAGSESTISSTLDESASTCTNLSLTPSSAKVTTPPFVLFDQPGPSQNHHAFGSLMGQGRRDVSFNKFYGGWKGVSEHVGKLIIGVDQSNFSDANSEVSVSESVATNRSNVSISEESETVVGDKINMPFIDFLGVGAT 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02385 378 PANTHER MYB PROTEIN-RELATED 110 254 - -
Pumo5g02385 378 ProSiteProfiles Myb-like domain profile. 157 207 IPR001005 -
Pumo5g02385 378 Gene3D - 110 161 - -
Pumo5g02385 378 Gene3D - 164 223 - -
Pumo5g02385 378 CDD SANT 113 154 IPR001005 -
Pumo5g02385 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 110 156 IPR017930 -
Pumo5g02385 378 SUPERFAMILY Homeodomain-like 110 203 IPR009057 -
Pumo5g02385 378 ProSiteProfiles Myb-like domain profile. 110 156 IPR001005 -
Pumo5g02385 378 SMART sant 109 158 IPR001005 -
Pumo5g02385 378 SMART sant 161 209 IPR001005 -
Pumo5g02385 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 157 211 IPR017930 -
Pumo5g02385 378 FunFam MYB transcription factor 110 161 - -
Pumo5g02385 378 CDD SANT 173 204 IPR001005 -
Pumo5g02385 378 FunFam MYB transcription factor 163 233 - -
Pumo5g02385 378 Pfam Myb-like DNA-binding domain 113 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02385 Pumo-Chr5 66434803 66437214 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02385 100 281 MYB Transcription Factor Family AT5G17800 61.579 8.51e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo5g02385 Myb_DNA-bind_6 2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02385 K09422 - gmx:100791795 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02385 5 66434803 66437214 Pumo5g02385 5 66434803 66437214 ECH