Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02374 ATGGTGTACTGCAGTCACTGTGCCAAAAATGTCGCCGGCGAGCGACTAGATGATGGTTTCTTATGTTGTGGAGGCTGTGGGAGGGTGTTGGAAGATTACTTTTTTACTGAGGAGCCTACATTTGTTAAGAACGCAGCAGGGCAGAGTAAATTATCAGGCAATTATGTAAGAACAGTTCAAAGCGAGTACTCTGAATCACGTCAAAGGACTTTAGATAGAGCTTATGATGAAATTAAATATTTAAGTTTCGGCCTTGGAGTTAATGACGAACATATGGCTGACCAAGCTTTGACCTTTTATAAAATAGCGCTTGAGCGAAATTTCACCCGTGGACGTAGATCAGAACAAGTACAGGCTGCTTGTCTCTATATTGCATTCCGGCACAACAATAAACCATACCTTCTTATTGATTTTTCAAATTATTTAAGGACAGATGTTTATGTGCTAGGAGCAGTTTTCTTGCAGCTTTGTCAAGTGTTAAGGCTTGGAGAGCACCCAATTGTTCAAAAGCCTGTTGATCCTAGTCTTTTCATTCATAGATATACCAAGAATTTGTTAAAGCGAGGGAGTAAGGCTGTCTCTGATACTGCGTTGGCCATTGTTGCAAGCATGAAACGTGACTGGATGCAGACAGGGAGGAAACCTAGCGGATTATGCGGTGCAGCATTATACATATCTGCTCTTGCACATGGTATTAAGTGCTCTAAGCCGGATATTCTTAGAATCGTCCATGTATGTGAAGCAACATTGACCAAACGATTGGTAGAATTTGAGAATACGGAGTCTTCTAGCTTGACAATTGAGGAGTTGAATACGATGGCAAAAGAGCATGAAAAAAATCCAATGGTAATGCCAGAAGGTGGATTAAAAGGATGTATTTCAAAAGATCTACTGTGTGAGCACAAGGAGGATAGTGGGGTGACCCATTTTGCACTTGGATTATGTGAAGCATGCTATAAGGATTTTGATAAGCTCTCTGGTGGACTTGGTGGTGGTTTGGATCCTCCTGCATTCCAGCGTGCTGAGAGGGAAAGACTTAAAAAAACACTTCCCGAGGAGAGTGTCGATGAAGCATGTGCTTTGGCGAATGCATCAAATGATCAGTTTAAGAGCCACAAAGAAGATTTGCCTGCCTATGTGCCAGAAAGTATTGGGGCTAATGTTGAGCATGAGGCCACTAAAGATGGTAAATATGATGATTCACATAGAGAAAATGAATCAGAAACTTTATCTGATATTGATGATGAAGACGTTGATTTGTACATTCATGATGAGGAGGGGAAGCGTATCAAGAAGATACTATGGGAAACAGCAAATCGGGAGTATCTTGAGGAGCAGGCAGCCAAGGAAGCAGCTGCAGCAGCTAATAAGAAAGCTTTTGAGGCAAATTTTGAAAACTGTTCGGAGGATTTACTAGCGGCAAGAGAGCTTGCTGCATCTTCTGCTGAAGCTGTGGCAAAATCCAGAAAGGAAATGAGACAGAGACGAGCCTATGAGGCAAAAAATACAAGGCCAGCTCAATCTGCTGCAGAGGCCTTTGGCCAAATGTCTAATAAAAAAAGGAATTTGCAGAGTCTCAAATCTAAAGTCAATTTTGATCGCCTGGGTGAATTATTTGATGAAATGGAAAATACCGATGATCTCAAGAAACAGAAGAAAGTACGATTTGATCCGCCCGTAGATAATCACGACAAACTGTCCAAGATCGAGAACAAAAATGAAGATGAGATGGGATCAGCAGATGATTTTGAAGATGAAGGTGATATGGGGGAGATGTATCAAAATAAGTTGTCTACTGAAAATATGATGATAAATATTTCCCTGAGGATGATGGTTTCGGCTATAATGATTATGATTATTTCTGAAAAGTTGATACATGATCTTTCTGCTTTTATTATCTGA 1902 0.4064 MVYCSHCAKNVAGERLDDGFLCCGGCGRVLEDYFFTEEPTFVKNAAGQSKLSGNYVRTVQSEYSESRQRTLDRAYDEIKYLSFGLGVNDEHMADQALTFYKIALERNFTRGRRSEQVQAACLYIAFRHNNKPYLLIDFSNYLRTDVYVLGAVFLQLCQVLRLGEHPIVQKPVDPSLFIHRYTKNLLKRGSKAVSDTALAIVASMKRDWMQTGRKPSGLCGAALYISALAHGIKCSKPDILRIVHVCEATLTKRLVEFENTESSSLTIEELNTMAKEHEKNPMVMPEGGLKGCISKDLLCEHKEDSGVTHFALGLCEACYKDFDKLSGGLGGGLDPPAFQRAERERLKKTLPEESVDEACALANASNDQFKSHKEDLPAYVPESIGANVEHEATKDGKYDDSHRENESETLSDIDDEDVDLYIHDEEGKRIKKILWETANREYLEEQAAKEAAAAANKKAFEANFENCSEDLLAARELAASSAEAVAKSRKEMRQRRAYEAKNTRPAQSAAEAFGQMSNKKRNLQSLKSKVNFDRLGELFDEMENTDDLKKQKKVRFDPPVDNHDKLSKIENKNEDEMGSADDFEDEGDMGEMYQNKLSTENMMINISLRMMVSAIMIMIISEKLIHDLSAFII 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02374 633 SUPERFAMILY Zinc beta-ribbon 2 43 - -
Pumo5g02374 633 MobiDBLite consensus disorder prediction 496 517 - -
Pumo5g02374 633 SMART cyclin_7 76 158 IPR013763 -
Pumo5g02374 633 SMART cyclin_7 176 259 IPR013763 -
Pumo5g02374 633 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Pumo5g02374 633 Gene3D - 63 164 - -
Pumo5g02374 633 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 526 IPR000812 GO:0006352|GO:0070897
Pumo5g02374 633 MobiDBLite consensus disorder prediction 388 409 - -
Pumo5g02374 633 MobiDBLite consensus disorder prediction 384 412 - -
Pumo5g02374 633 MobiDBLite consensus disorder prediction 556 576 - -
Pumo5g02374 633 FunFam Transcription factor IIIB subunit 173 262 - -
Pumo5g02374 633 Pfam Transcription factor TFIIB repeat 68 156 IPR013150 GO:0017025
Pumo5g02374 633 Pfam Transcription factor TFIIB repeat 169 259 IPR013150 GO:0017025
Pumo5g02374 633 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Pumo5g02374 633 Gene3D - 173 264 - -
Pumo5g02374 633 SUPERFAMILY Cyclin-like 172 265 IPR036915 -
Pumo5g02374 633 MobiDBLite consensus disorder prediction 556 588 - -
Pumo5g02374 633 Pfam Brf1-like TBP-binding domain 411 540 IPR011665 -
Pumo5g02374 633 Coils Coil 566 586 - -
Pumo5g02374 633 Gene3D Single helix bin 404 453 - -
Pumo5g02374 633 SUPERFAMILY Cyclin-like 74 162 IPR036915 -
Pumo5g02374 633 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Pumo5g02374 633 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Pumo5g02374 633 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Pumo5g02374 633 CDD CYCLIN_TFIIIB90_rpt1 70 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02374 Pumo-Chr5 66075739 66089806 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02374 1 526 Inorganic Solute Cotransporters AT2G01280 42.222 5.50e-114 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02374 K15196 - gmx:100817609 1073.54