Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02347 ATGGAGAACAAAAGAACGGTGGTGAATGAAGAAGAACAGAAACGCAGCCCCAGAAACCAGAAGATCCCATTAGCAGATTCCAATGGCCAAAACATGGCGACCCTTTTCAGCCCAAGGTTCAAATCTGCGGCTGCCATGGCTGGTTGGGATGAAGAGGCACTGTTATTGGCTAGCCTCATTGTTGAAGACACCCCAGATAGAGATCCCAAGCACAAGAAGCGCTATGTTTTGCACTCCAAAACCCCACCCACCAACTCATCAAGGAAACGTAGAGCTCAGAGGAGTTCACAAGCACCAATCCCTGTAGTTACTCTTGATCTTGATGCAGAAGAAACTCCCAAAAAAGATAGTGGGAGAAAGAAGAAAGAAAAGAAAGCTTGTGTTGATAACGAGGGAAGCAAAGTAGGAGAGGGTGGGAATGAAGTGACCGAGAAGAACCCGGGTGCCCCTTCTTTTAGTTCTGCTCTTCCCTGCATTGATAAACTAAGGGATGAGCTTTCCTGTGCTATTTGTTTGGAGATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTCTGTAGAAAATGTCTACGATCTGCTGCAGACAAGTGTGGCAAAAAGTGCCCAAAATGCAGGCAGTTAATAAGCAATGGAAGATCTTGCACTGTGAACACAGTTCTGTGGAACACAATCCAGCTCCTGTTTCCCCAAGAAGTTGAAGCAAGAAAAGCAGCTAGTGCCTCAAATGGTCGCCAACAAGCTCAAAATCTGAGTCCAGTAACAGCATTTTTTGCTAACCTAAGGAATAGCAGCAGCACACAACCACCAGGGGGGGCATCAAGCAGAAGCATGAATTCAAGGAGGAGTGGAACAACAACAACAACATCAACATCAACACAGGAGGATGAGGATGCTGCATTGGCTAGAATGTTGCAGAGAGAAATTGATGAGCAAAGCCCCGGAACAAGCAGAACTCGGGTTCACACTGCAAGACTGAGGTCAAGAAGAGGAGGGGTTTATACTAGCCAACATGAGGATGCAGCTTTGGCTCTAAGGTTGCAGAGAGAAGAGTTCATGCAAACTCATAGGGGTAGCAGTCAGGAACAGTCTAGCAGGCTACCTTCATCCTCATTGGCTAGAGAAAATTTGAGGGCTATGGCATCTAGAGCCATGAATCACAGAAGAAGATCTTAG 1179 0.4648 MENKRTVVNEEEQKRSPRNQKIPLADSNGQNMATLFSPRFKSAAAMAGWDEEALLLASLIVEDTPDRDPKHKKRYVLHSKTPPTNSSRKRRAQRSSQAPIPVVTLDLDAEETPKKDSGRKKKEKKACVDNEGSKVGEGGNEVTEKNPGAPSFSSALPCIDKLRDELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEVEARKAASASNGRQQAQNLSPVTAFFANLRNSSSTQPPGGASSRSMNSRRSGTTTTTSTSTQEDEDAALARMLQREIDEQSPGTSRTRVHTARLRSRRGGVYTSQHEDAALALRLQREEFMQTHRGSSQEQSSRLPSSSLARENLRAMASRAMNHRRRS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02347 392 SMART ring_2 168 206 IPR001841 -
Pumo5g02347 392 MobiDBLite consensus disorder prediction 351 392 - -
Pumo5g02347 392 MobiDBLite consensus disorder prediction 108 131 - -
Pumo5g02347 392 MobiDBLite consensus disorder prediction 62 148 - -
Pumo5g02347 392 Pfam Zinc finger, C3HC4 type (RING finger) 168 206 IPR018957 GO:0046872
Pumo5g02347 392 MobiDBLite consensus disorder prediction 1 32 - -
Pumo5g02347 392 ProSiteProfiles Zinc finger RING-type profile. 168 207 IPR001841 -
Pumo5g02347 392 MobiDBLite consensus disorder prediction 263 298 - -
Pumo5g02347 392 MobiDBLite consensus disorder prediction 1 19 - -
Pumo5g02347 392 PANTHER UNCHARACTERIZED 337 388 - -
Pumo5g02347 392 MobiDBLite consensus disorder prediction 79 100 - -
Pumo5g02347 392 ProSitePatterns Zinc finger RING-type signature. 183 192 IPR017907 -
Pumo5g02347 392 MobiDBLite consensus disorder prediction 263 338 - -
Pumo5g02347 392 SUPERFAMILY RING/U-box 160 231 - -
Pumo5g02347 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 237 IPR013083 -
Pumo5g02347 392 MobiDBLite consensus disorder prediction 358 377 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02347 149 222 RAD5 or RAD16-like Gene Family AT5G43530 37.500 1.36e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02347 - - gmx:102666585 595.119