Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02339 ATGGGAAGACAACCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACTATTGAGGAAGATCACAAGCTCATGAACTTTATTCTTAACAATGGCATCCATTGCTGGAGAACGGTTCCAAAACTATCAGGTCTTCTAAGATGTGGAAAGAGTTGCAGACTCAGATGGATTAATTATCTGAGGCCAGACCTTAAGAGAGGTGGCTTCACAGAAATGGAAGAGGATCAAATCATAGAACTACATTCACGTCTTGGTAACAGATGGTCTAAGATTGCTTCACATTTTCCTGGGAGAACAGACAATGAAATCAAGAACCATTGGAACACAAGAATCAAGAAAAGGCTGAAACTCCTTGGTCTGGACCCTGTGACCCACAAGCCAATTGAACAAAAGGTTCACACTGATGAGGACACAAATAAGACCAACCCACATTCTGGAGGGTCTGAAGAAAATGTGGAGATTAAATCCTTGGACAGTGATGGCACCAAAGAAATCATGACGAAAACAGAAGGGAAAAGAGAAGAAAACAAGGTGATGATGACTTGGGATGATACCTCTGAACTTCTAAACAATTTTGAAATGCTATGTTCTCAGCTGGACTTGGGATCATGGATGAGTCAAGAAACCAATAATACTAGTACTAATTCTTTATGTTGTTCATCTGTCTCTATGGATGACACTAGTCACCTCTCTATGGATGAATCCTCTTACATACAGGAAAACTCCTTACAACAATGGGTTGATAGTATGGATTCCATTCTCCCATGGGATGGATTCAATAATCCTCTTGATCAAGACATTTTCTTCTTGGAAAATAGGGAATAA 828 0.3998 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRTVPKLSGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIELHSRLGNRWSKIASHFPGRTDNEIKNHWNTRIKKRLKLLGLDPVTHKPIEQKVHTDEDTNKTNPHSGGSEENVEIKSLDSDGTKEIMTKTEGKREENKVMMTWDDTSELLNNFEMLCSQLDLGSWMSQETNNTSTNSLCCSSVSMDDTSHLSMDESSYIQENSLQQWVDSMDSILPWDGFNNPLDQDIFFLENRE 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02339 275 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo5g02339 275 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo5g02339 275 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Pumo5g02339 275 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo5g02339 275 CDD SANT 16 61 IPR001005 -
Pumo5g02339 275 FunFam MYB-related transcription factor 13 66 - -
Pumo5g02339 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo5g02339 275 SMART sant 13 63 IPR001005 -
Pumo5g02339 275 SMART sant 66 114 IPR001005 -
Pumo5g02339 275 MobiDBLite consensus disorder prediction 152 166 - -
Pumo5g02339 275 FunFam Myb-related protein 315 69 147 - -
Pumo5g02339 275 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo5g02339 275 Gene3D - 11 67 - -
Pumo5g02339 275 CDD SANT 70 110 IPR001005 -
Pumo5g02339 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo5g02339 275 Gene3D - 69 146 - -
Pumo5g02339 275 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 224 - -
Pumo5g02339 275 MobiDBLite consensus disorder prediction 129 144 - -
Pumo5g02339 275 MobiDBLite consensus disorder prediction 129 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02339 Pumo-Chr5 65018192 65019353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02339 1 132 MYB Transcription Factor Family AT5G16600 77.273 2.23e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo5g02339 Myb_DNA-binding 2.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02339 K09422 - gmx:100783231 508.064