Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02310 ATGGCTCACCTATGCTTCCTTCTATTAGCTCTCTCTCTTCTGATTCCCAACTTTGTTTCCTCCTCAGCAGTACATGACCCTATACTAGTTGTACAAGATGTACACAGAAGCATCAATGCCTCTAGAAGAAACCTGGGTTATTTCTCATGCGGAACCGGCAACCCCATCGACGATTGCTGGCGGTGCGACCCAAACTGGGAAACCAACCGGCAGAGGCTAGCAGACTGCGCCATCGGGTTCGGAAGAGATGCACTGGGAGGAAGAAACGGCCGAATCTACGTCGTCACCGACTCCGGCGATGACGACCCGGTGAACCCTAGGCCAGGAACACTGAGGCACGCGGTGGTCCAGGACTCGCCATTGTGGATTATTTTCAACCGGGACATGGTGATAACCCTCAAGCAGGAGCTCGTGATGAACTCGTTCAAAACCCTGGACGGAAGGGGCGCGAGCGTGCACATCGCCGGTGGGGGATGCATCACCATACATTACGTGAGCAACATCATCATCCATGGAATTCATATACATGATTGCAAGCCCACGGGGCATGGGTACATACGAGACTCCCCAAGGCATTATGGGTGGTGGACTGTTTCGGATGGGGATGGGGTTTCCATTTTTAATTCGAGGCATGTGTGGATTGACCATTGCTCGTTGTCGAATTGCCATGATGGGCTCATTGATGTCATTCATGGATCCACTGCTGTTACTATCTCGAATAATTACATGACCCATCATAATAAGGTCATGCTCTTGGGGCATAGTGACTCTTACATGCAAGACAAGGACATGCAGGTTACCGTGGCCTTTAACCATTTTGGAGAAGGCCTTGTCCAAAGAATGCCAAGGTGTAGACATGGGTATTTTCATGTGATCAACAACGACTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCGAGCCCTACCATCAACAGCCAGGGGAACAGGTTTGTTGCACCGGACAACAGGTTCAGCAAGGAGGTGACCAAGCACGAGGATGCTCCGGAGAACGAATGGATGCACTGGAACTGGAGGTCAGAGGGGGACTTGTTCCTGAATGGAGCATTCTTCATCCAATCCGGTGCAGGTGCCTCTTCTTCCTATGCTAGGGCATCAAGTGTGAGTACAAGACCATCTTCACTTGTTGGCTCCATGACAATGAATGCTGGTGCACTCAACTGCAGAAAAGGCACCCGTTGCTGA 1209 0.5095 MAHLCFLLLALSLLIPNFVSSSAVHDPILVVQDVHRSINASRRNLGYFSCGTGNPIDDCWRCDPNWETNRQRLADCAIGFGRDALGGRNGRIYVVTDSGDDDPVNPRPGTLRHAVVQDSPLWIIFNRDMVITLKQELVMNSFKTLDGRGASVHIAGGGCITIHYVSNIIIHGIHIHDCKPTGHGYIRDSPRHYGWWTVSDGDGVSIFNSRHVWIDHCSLSNCHDGLIDVIHGSTAVTISNNYMTHHNKVMLLGHSDSYMQDKDMQVTVAFNHFGEGLVQRMPRCRHGYFHVINNDYTHWEMYAIGGSASPTINSQGNRFVAPDNRFSKEVTKHEDAPENEWMHWNWRSEGDLFLNGAFFIQSGAGASSSYARASSVSTRPSSLVGSMTMNAGALNCRKGTRC 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02310 402 FunFam Pectate lyase 53 395 - -
Pumo5g02310 402 SMART amb_all 128 325 IPR002022 -
Pumo5g02310 402 Gene3D - 53 395 IPR012334 -
Pumo5g02310 402 Pfam Pectate lyase 135 319 IPR002022 -
Pumo5g02310 402 PANTHER PECTATE LYASE 18-RELATED 26 400 IPR045032 GO:0030570
Pumo5g02310 402 SUPERFAMILY Pectin lyase-like 38 397 IPR011050 -
Pumo5g02310 402 PRINTS Pollen allergen Amb family signature 100 125 IPR018082 -
Pumo5g02310 402 PRINTS Pollen allergen Amb family signature 344 368 IPR018082 -
Pumo5g02310 402 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Pumo5g02310 402 PRINTS Pollen allergen Amb family signature 373 396 IPR018082 -
Pumo5g02310 402 PRINTS Pollen allergen Amb family signature 200 221 IPR018082 -
Pumo5g02310 402 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Pumo5g02310 402 PRINTS Pollen allergen Amb family signature 136 152 IPR018082 -
Pumo5g02310 402 PRINTS Pollen allergen Amb family signature 302 321 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02310 Pumo-Chr5 63722192 63726025 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02310 2 402 Polysaccharide Lyase AT5G63180 74.138 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02310 K01728 - gmx:100794814 722.235