Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02296 ATGCAATGCATTGCAGCCATAGTAGGAAAATTCAGATGGAGAAAGGGGACAACAATCTATGAACTTAATAATGGGTTTTCCTATGATCCAGGGATGCTACTAGACCTCTCCTATGCTCTTAGACATGTTGGTTCAGAGATTGATAATCATTTGGCTTTGCCTTCCTTGTCCTCTCTCTCAGACCCAAAATGTGCCATTGAAAATGAGCTTAAAAGGCTCAAAAGAAAAAGCAACAGGGTCTTCTTGATTGTGCAATCTTCTTTGGAGCTGGCTAGCATACTTTTTGAGAAAGCAATGCAAATGGGTTTGATGGAAAAAGGTTCTGTGTGGGTTATCCCAGATGGGGTTGTTGGCCTTCTTGATCCAGTTAACTCGTATGTTATCATCAACATGCAAGGTGTTATTGGATTTAAGACACACTTCATGGAAACAAGTGAGGCATTTAGAAGGTTCAAGTCCAAATTTCAAAGAAGGTCTTTATTGGAGTTCCCTGAAGAAGAGAACATTAACCCAAGTTTCTTTGCACTTCAATCATATGAAGCAACCTGGGCTGTTGCTAAGGCTGCAAAGGAATCACAAGGGAAGTTTACCCTTGAACAATTATTCAGAACTAATCTTTCCAGGAATAGCAAATTAAAGCAATCACCAACCTTCAATATAATTAATGTGATAGGTAAAAGTTATAGAGAGTTGGCATTATGGTCTCCAAAACTAGGTTTCACCAAAAACCTTGTCACACAACAGGTAACAGAGACGATGAAGACAAATACTCCTTCAATTAGAGTTTTGAGTACAGTTTATTGGCCTGGAGGCTTACAGTTTGTTCCTAAGGGATGGACTCGCAACACCGACGAGAGGACATTGCAAATAGGAGTGCCTGCAAATGGTGTCTTTCATCAGTTTGTAAATGTGACACATGATCAGAACACGAATAACACTTCTATCACCAGGTTCTCAATCGATGTGTTCAAAGCAGTCCTTAATACTTTGCCTTATGACTTGAAATACACATTTGTTCCCTTCAACGGGTCTTATGATGAAATGGTAGAGCAAGTCTACAATAAGACGTTGGATGCTGCCATGGGAGATACAACAATAATGGCATATAGATATCATTTAGTGGACTTCTCACAACCCTATCTTGAATCAGGCCTCAACATGGTGGTCACAGAGCAATCAACAAAATCAAAAGGAACATGGATTTTTTTGGATGTCTTCACAAAAGAGATGTGGTTGATGATGGCAGCATTGCACATTTTCGTGGGATTTGTCATTTGGTTGATTGAACGACAAGTTAATGCAGAACTAAAGGGATTGGGGTCCATGCTTTGGTTTTTAGGCACTGTAATATTCTATGCACACAGAGAACCAATTAGAAACCCCTTGGCTCGAATTGTAATGGCACCATGGTTATTTGTTATCCTCATTGCAACTAGTACTTTCACAAGAAGTTTGACTTCCATGATGACTGTTTCGCGGCTAGAGCCATCTATTTTAGATATCCAGACCCTTCAGAAGAGAAATTCCCCAGTTGGTTGTAATGGAAATTCTTTCATTGTGAAGTATTTGACTGACATACTAAAATTCAAGCCTGAGAACATTAGAAAAATTTACTCCATAAGTGATTACCCTGTTGCCTTTCAGAACAAGTATATTGAAGCCGCTTTCTTTAGTACGCCTCATGCTAAGGTCTTTCTGGCAAAGTATTCATGCAGGGGTCTCATGAAAGCAAGGAACACTTTCAAGCTTGGTGGCATAGGTTTTGTGGGTCTCTCTTCCTCATTGTATCCATTTTATGACATGTTTGGTAGTAGTGAAAAGCGGGGTAATTCTAAGAAAATTTTGAAATTGGAAACATAG 1860 0.3935 MQCIAAIVGKFRWRKGTTIYELNNGFSYDPGMLLDLSYALRHVGSEIDNHLALPSLSSLSDPKCAIENELKRLKRKSNRVFLIVQSSLELASILFEKAMQMGLMEKGSVWVIPDGVVGLLDPVNSYVIINMQGVIGFKTHFMETSEAFRRFKSKFQRRSLLEFPEEENINPSFFALQSYEATWAVAKAAKESQGKFTLEQLFRTNLSRNSKLKQSPTFNIINVIGKSYRELALWSPKLGFTKNLVTQQVTETMKTNTPSIRVLSTVYWPGGLQFVPKGWTRNTDERTLQIGVPANGVFHQFVNVTHDQNTNNTSITRFSIDVFKAVLNTLPYDLKYTFVPFNGSYDEMVEQVYNKTLDAAMGDTTIMAYRYHLVDFSQPYLESGLNMVVTEQSTKSKGTWIFLDVFTKEMWLMMAALHIFVGFVIWLIERQVNAELKGLGSMLWFLGTVIFYAHREPIRNPLARIVMAPWLFVILIATSTFTRSLTSMMTVSRLEPSILDIQTLQKRNSPVGCNGNSFIVKYLTDILKFKPENIRKIYSISDYPVAFQNKYIEAAFFSTPHAKVFLAKYSCRGLMKARNTFKLGGIGFVGLSSSLYPFYDMFGSSEKRGNSKKILKLET 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02296 619 Gene3D - 399 536 - -
Pumo5g02296 619 FunFam Glutamate receptor 399 532 - -
Pumo5g02296 619 Gene3D - 280 398 - -
Pumo5g02296 619 SUPERFAMILY Periplasmic binding protein-like I 4 279 IPR028082 -
Pumo5g02296 619 Pfam Bacterial extracellular solute-binding proteins, family 3 312 576 IPR001638 -
Pumo5g02296 619 Pfam Ligand-gated ion channel 408 517 IPR001320 GO:0015276|GO:0016020
Pumo5g02296 619 FunFam Glutamate receptor 1 169 - -
Pumo5g02296 619 SUPERFAMILY Periplasmic binding protein-like II 260 589 - -
Pumo5g02296 619 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 590 IPR015683 -
Pumo5g02296 619 SMART GluR_14 287 619 IPR001320 GO:0015276|GO:0016020
Pumo5g02296 619 FunFam Glutamate receptor 283 398 - -
Pumo5g02296 619 Gene3D - 1 172 - -
Pumo5g02296 619 Pfam Receptor family ligand binding region 2 195 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02296 Pumo-Chr5 62432725 62435220 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02296 1 588 Ion Channels AT5G11210 32.970 4.64e-100 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02296 - - gmx:100777873 967.992