Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02279 ATGCCCCCATCTTCCTTGTTCTCTTTGCCAAACATTAGCTATTTGAATTTAGCCAGCAATAAGCTAAGTGGGTCCCTTCCACACAAACTAAAATGTGGCAGCAAACTTGGGTTTGTGGATATCTCTAGTAACAAGTTAAATGGTGGACTTCCTTCTTGCTTGGTCAATACATCAGGTAAAAGAGTTGTTAAATATGGTGGAAACTGTTTAGCTGTTGATTCACAACCTCAGCGGCGAGGGACTTATTGTAAAGAATCCAGTTCAGGAAGGAAGAACTTCTGGAAATGGAAAATAGCTGCAGCAGTTGCCATGATTATTGTAATTGTTCTTGTACTTTCAGCTTTTGGAGTTTTCTTTTATAGAAAATATCATTCAAGGAAGATGTATAGGCATCAGATGTTGCCTAAGGCTGTTCAAGATAACTCAACAACAGGAGTTTCTTCTGAAGTCCTTGCTAGTGCTAGATTCATTTCTCAAGTAGCAAAGCTAGGGACACAAGCTATTCCTACCTGTCGACAGTTTTCTATTGAAGAGTTGAAGGGTGTCACAAGAAACTTTGATTTGTCAACTTTTATTGGTGAAGGCTCCTTAGGAAAGCTGTACAAAGGTAAACTAGAGAATGGATCCTATGTGGTGATAAGATGTGTGGCTCTGTCAAAGAAATGCTCAATACAAAATCTTAAAGCTCGGTTGGATTTACTCTCAAAGCTTCACCATCCAAATTTGGTTAGCCTTTTGGGTCATTGTATTGATGGTGATGGACAAGATGATTCCAGTGGCCTCAAACTTCATCTTGTATATGAGTATGTGCCAAATGGGAATTATCGTACCCATTTGTCAGAATTTTCATCAGACAAGGCACTAAAGTGGTCTGATAGATTGGCAATTTTAATTGGAGTTGCCAAAGCTGTGCATTTTTTACATACTGGAGTTATACCGGGTTGTTTTAGAAATCAACTAAAGACAAACAATGTTTTACTTGACGAGCATCACATTCCCAAACTAAGTAACTATGGTATGTCATTGATTGCTGAGGAGATCGAATACCTTGAGGCAAAGGGAGAGAATCCAAAATCATGCCAAAGAGCAAAATTAGAAGATGATGTCTATAATTTCGGATTGATATTATTTGAGTCTCTTGTTGGGCCCATAGCAAGCGAGAAAGGAGAGGAATATTTTCTTGATGAAAGGACATCCCTTGACAGTCAAGATGGTAGAATTAAAATAGTGGATCCTGTAGTGTTGACCACTTGCTGTCCAGAGTCATTATCAATTGCAACATCTATCACAACCAAATGCATATCCCCAGAATCCTCACCTCCCTCTTTTGAGGATGTTTTATGGAACTTACAGTATGCAGCTCAAGTCCAAGCCACAGCAGATGCAGAACAAAAAACAGATTCTACATCCTAG 1413 0.39 MPPSSLFSLPNISYLNLASNKLSGSLPHKLKCGSKLGFVDISSNKLNGGLPSCLVNTSGKRVVKYGGNCLAVDSQPQRRGTYCKESSSGRKNFWKWKIAAAVAMIIVIVLVLSAFGVFFYRKYHSRKMYRHQMLPKAVQDNSTTGVSSEVLASARFISQVAKLGTQAIPTCRQFSIEELKGVTRNFDLSTFIGEGSLGKLYKGKLENGSYVVIRCVALSKKCSIQNLKARLDLLSKLHHPNLVSLLGHCIDGDGQDDSSGLKLHLVYEYVPNGNYRTHLSEFSSDKALKWSDRLAILIGVAKAVHFLHTGVIPGCFRNQLKTNNVLLDEHHIPKLSNYGMSLIAEEIEYLEAKGENPKSCQRAKLEDDVYNFGLILFESLVGPIASEKGEEYFLDERTSLDSQDGRIKIVDPVVLTTCCPESLSIATSITTKCISPESSPPSFEDVLWNLQYAAQVQATADAEQKTDSTS 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02279 470 ProSiteProfiles Protein kinase domain profile. 186 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02279 470 SUPERFAMILY Protein kinase-like (PK-like) 168 448 IPR011009 -
Pumo5g02279 470 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 149 269 - -
Pumo5g02279 470 Gene3D Ribonuclease Inhibitor 2 78 IPR032675 -
Pumo5g02279 470 Gene3D Transferase(Phosphotransferase) domain 1 270 469 - -
Pumo5g02279 470 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 3 58 - -
Pumo5g02279 470 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 1 88 - -
Pumo5g02279 470 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 270 469 - -
Pumo5g02279 470 Pfam Protein tyrosine and serine/threonine kinase 189 378 IPR001245 GO:0004672|GO:0006468
Pumo5g02279 470 Gene3D Phosphorylase Kinase; domain 1 136 269 - -
Pumo5g02279 470 SUPERFAMILY L domain-like 2 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02279 Pumo-Chr5 60930079 60935275 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02279 12 464 Miscellaneous Gene Families AT5G63410 50.524 6.03e-154 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Pumo5g02279 PK_Tyr_Ser-Thr 4.1e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02279 - - gmx:100813412 868.611