Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02275 ATGGGCACAGTAGAAATGATCATTGCATTTCACATGAAGGCTTTGGTCTTTTTCCTTTGGCTGTTTGTCCCCTCATTGGGCAAAGACTTGCTAAGCTGTGAGACAACTTCACCTGATGCATCTGGCTACCATTGCATTGAAAATGTGTCACACAACCAATGTGAGACATTTGCACTCTTTCTCACAAACTCCTACTACTCCTCTCTCTCCAACCTCACCTCTTACTTGGGACTCAATAAGCTGAAGTTGACCAAAACTGCCATCAAAGGAGAGAGCTTCTATGGCATTGCTCAATCACTAGAGGGCTTGACAACCTGCAAGGCTATTAGGGACAACAACCCTGGTGTGTCACCTTGGAATCTTGATGACAAAGTGAGATTGATTGTTCCATTGAGATGTTCCTGCCCATTTTCATCTCAAGTTAGGCCACAACCAAAGCTTCTGCTTTCTTATCCTGTAAGTGAAGGTGATACTATTTCCAATTTGGCCTCAAAGTTCAATACTACTAAAGAAGCTATTGTTTCTGCTAATAACATATCATCGCAAGGCCTTATTAGGACTAGAAGTAGTCTTGCACCCTTTACCTCTATTCTCATTCCACTTAATGGTAAGCCTATCATTGGTCCTTTGGTTCAGCCCAAGGAACCCAATTCTGGCTTTCAAACAACCAGCATCCCAGTGACAAGTCCACACAAGAAGTCACCAATGTGGAAGACTGAATTGTGCATTGGCCTAGCTGGGGTTGCACTTGGAGTCTGCATTGCTTTTGCAGCAGCCTTTTTCTTCATCAGATTGAAGCACAAGAAGGAGGAAGAGAATTCATGCAAAGAAGGGGACATGGAGCTGCAATATCTGAATCAAAGTGTGAGAACCACCTCAACTAGTGACAAGAAAGTTTCATTTGAAGGGTCTCAGGATGCTCTTGATGTGAAAATTGTGGATGCCACACCGCGGAAGTTGTTGCTGGAGACATACACCATTGAAGATGTGAGAAAAGCAACTGAAGATTTCAGCTCAAGCAATCAAATTGAAGGGTCGGTGTATCACGGTCGTCTGAATGGGAAGAACATGGCAATCAAAAGAACAAAGGCAGAAGTAGTGTCAAAGATAGATCTTGGCCTCTTCCATGATGCACTTCACCACCACCCCAACATACTTAGGCTTCTTGGAACAAACATGTTAGAGGGGAAGGAGCAAGAAGAGTCATTTTTAGTTTTTGAGTATGCCAAAAATGGTTCATTGAAAGATTGGCTCCATGGTGGATTAGCCATCAAGAACCAATTCATTGCTTCCTGCTACTGTTTCCTGACATGGAGCCAAAGGCTCAGGATCTGCCTTGATGTGGCCAGTGCCTTGCAGTATATGCACCATTTTATGAATCCAAGCTATGTGCATAGAAATGTAAAGAGCAGGAACATCTTTTTGGATGAAGAATTTGGTGCCAAGATAGGGAATTTTGGTATGGCAGGTTGTGTTGAGAATGACACTGAGGACCCAAATTTCGATTCCACCAACCCTGCTTCTTGGAGTCTTGGTTATTTGGCACCTGAATATGTTCACCAAGGCATAATTTCCCCAAGCATTGATATCTTTGCTTATGGGGTGGTTTTGTTGGAAGTTTTGTCTGGTCAAACACCTATGAGCAGGCCTAATGATAAGGGAAGAAGGAAGCATTTGGCTTACAGATAA 1689 0.431 MGTVEMIIAFHMKALVFFLWLFVPSLGKDLLSCETTSPDASGYHCIENVSHNQCETFALFLTNSYYSSLSNLTSYLGLNKLKLTKTAIKGESFYGIAQSLEGLTTCKAIRDNNPGVSPWNLDDKVRLIVPLRCSCPFSSQVRPQPKLLLSYPVSEGDTISNLASKFNTTKEAIVSANNISSQGLIRTRSSLAPFTSILIPLNGKPIIGPLVQPKEPNSGFQTTSIPVTSPHKKSPMWKTELCIGLAGVALGVCIAFAAAFFFIRLKHKKEEENSCKEGDMELQYLNQSVRTTSTSDKKVSFEGSQDALDVKIVDATPRKLLLETYTIEDVRKATEDFSSSNQIEGSVYHGRLNGKNMAIKRTKAEVVSKIDLGLFHDALHHHPNILRLLGTNMLEGKEQEESFLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWSQRLRICLDVASALQYMHHFMNPSYVHRNVKSRNIFLDEEFGAKIGNFGMAGCVENDTEDPNFDSTNPASWSLGYLAPEYVHQGIISPSIDIFAYGVVLLEVLSGQTPMSRPNDKGRRKHLAYR 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02275 562 ProSiteProfiles LysM domain profile. 149 199 IPR018392 -
Pumo5g02275 562 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 84 547 - -
Pumo5g02275 562 Pfam Protein tyrosine and serine/threonine kinase 355 549 IPR001245 GO:0004672|GO:0006468
Pumo5g02275 562 SUPERFAMILY Protein kinase-like (PK-like) 320 552 IPR011009 -
Pumo5g02275 562 ProSiteProfiles Protein kinase domain profile. 333 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02275 562 Gene3D Transferase(Phosphotransferase) domain 1 409 561 - -
Pumo5g02275 562 Gene3D Phosphorylase Kinase; domain 1 312 408 - -
Pumo5g02275 562 SMART LysM_2 150 200 IPR018392 -
Pumo5g02275 562 SUPERFAMILY LysM domain 150 185 IPR036779 -
Pumo5g02275 562 CDD LysM 150 186 IPR018392 -
Pumo5g02275 562 Gene3D LysM domain 137 205 IPR036779 -
Pumo5g02275 562 Pfam LysM domain 151 186 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02275 Pumo-Chr5 60883432 60885732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02275 42 546 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 41.026 5.93e-120 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Pumo5g02275 PK_Tyr_Ser-Thr 2.5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02275 - - gmx:100816082 1024.23